PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03149.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 717aa    MW: 77200.2 Da    PI: 8.2447
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03149.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.73e-1615541756
                                  HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  +lF+++++p+ ++r++L+++lgL+ rqVk+WFqNrR++ k
  Zmw_sc03149.1.g00110.1.sm.mk 15 RLFKESPHPDDKQRQQLSRQLGLSARQVKFWFQNRRTQIK 54
                                  68**********************************9987 PP
2START174.56.4e-551804082206
                                   HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                         START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddk 69 
                                   la +a++el ++ +a+ep+Wv+s+    + +n+de+   f++++           s+ea+ra+gvv  ++++lv  ++d++
  Zmw_sc03149.1.g00110.1.sm.mk 180 LAGRALEELTTMCSAGEPLWVRSVetgrDVLNYDEYPLLFPRGDDgpgggrrapWSVEASRATGVVYLDTTRLVHAFMDVS 260
                                   67899**********************99***********9988899********************************** PP

                                   GCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.. CS
                         START  70 eqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe. 138
                                    qW+e ++    ka+tl vi+ g      ga+qlm+ae q+l+p+vp R+f f+Ry+++l a++w++vdvS d  ++  + 
  Zmw_sc03149.1.g00110.1.sm.mk 261 -QWKELFPsmisKASTLSVIQAGenddqdGAIQLMSAEVQMLTPVVPtREFRFLRYCKKLAAEKWAVVDVSFDKAEPDAQt 340
                                   .*******9999***************************************************************999998 PP

                                   -TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                         START 139 sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                   ss   ++ + pSg+++e+  ngh+kvtwveh+ ++ +++++++r    sgla+ga++wva+lq qce+
  Zmw_sc03149.1.g00110.1.sm.mk 341 SSTACKCLKNPSGCVVEERTNGHCKVTWVEHTTCRNATVTSMYRAAAASGLAFGARRWVAALQVQCER 408
                                   99999*************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-7760IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-141559IPR009057Homeodomain-like
CDDcd000861.73E-131554No hitNo description
PfamPF000461.1E-131554IPR001356Homeobox domain
SuperFamilySSF466894.6E-131557IPR009057Homeodomain-like
PROSITE profilePS5007114.8351756IPR001356Homeobox domain
PROSITE patternPS0002703154IPR017970Homeobox, conserved site
PROSITE profilePS5084837.125170411IPR002913START domain
SuperFamilySSF559611.65E-27173408No hitNo description
CDDcd088755.21E-93174407No hitNo description
SMARTSM002343.8E-47179408IPR002913START domain
PfamPF018522.5E-44180408IPR002913START domain
Gene3DG3DSA:3.30.530.209.2E-6236392IPR023393START-like domain
SuperFamilySSF559611.65E-11426579No hitNo description
SuperFamilySSF559611.65E-11628644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MTLLADAFMV DSTGRLFKES PHPDDKQRQQ LSRQLGLSAR QVKFWFQNRR TQIKERQENA  60
LLKSELEKLQ GENLAMRELV RKPSHCPGCG VPFSGNTTAA TTSEEHLLRL ENARLKAETW  120
NTVQVDRLRG TPGTTPAVGA VASPASPSCR AVQTNSPSSL DDYYVDGFLA GHGKARILDL  180
AGRALEELTT MCSAGEPLWV RSVETGRDVL NYDEYPLLFP RGDDGPGGGR RAPWSVEASR  240
ATGVVYLDTT RLVHAFMDVS QWKELFPSMI SKASTLSVIQ AGENDDQDGA IQLMSAEVQM  300
LTPVVPTREF RFLRYCKKLA AEKWAVVDVS FDKAEPDAQT SSTACKCLKN PSGCVVEERT  360
NGHCKVTWVE HTTCRNATVT SMYRAAAASG LAFGARRWVA ALQVQCERMV FSVATNIPTR  420
DSNGVSTPAG RRSVLKLAHR MTSSLCRGIG ASRGVAWSRA PNGGGGGDVR VMSRRNTGDP  480
GEPQGLIACA VLSTWLPVSP TALLDFLRDE SRRHEWDATL LGRSVHSCAN VTKGKDRGNC  540
VTIYVTFTPS RAITTLHLSQ KEPSIVVADS TCLLPSLPHQ AANSSAAEDK TGAGNWIVQD  600
SSTGPCESVV AYAPVDAAIL RRVIDGHDPS DVALLPCGFA IMPDGLDSRP AVITSSVGLD  660
GSAAKGGAGH RGVPGDGDPH GRRDAAGFGC GRDWAGRKHV GQHQESAAGL RYKLLQS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701492.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A1E5VBC30.0A0A1E5VBC3_9POAL; Homeobox-leucine zipper protein ROC9
STRINGSi004904m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147