PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03135.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 382aa MW: 40321 Da PI: 5.8091 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.3 | 9.1e-18 | 263 | 297 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Zmw_sc03135.1.g00020.1.sm.mkhc 263 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 297 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 6.0E-70 | 1 | 342 | IPR016679 | Transcription factor, GATA, plant |
Gene3D | G3DSA:3.30.50.10 | 4.2E-15 | 257 | 294 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.571 | 257 | 293 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.6E-18 | 257 | 307 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-15 | 259 | 320 | No hit | No description |
CDD | cd00202 | 1.53E-14 | 262 | 309 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 263 | 288 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-15 | 263 | 297 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEAAEATEYG HYGGAGRERK VAGCGGDLFA VDDLLVLPYD DEEEGDGEAP VVDAAGGGGT 60 VQVKEEGGFG NLSADSSTVT TALDSCSNSF SGLADGDFSG ELCEPYDQLV ELEWLSNYMG 120 EGEDTFATED LQKLQLINGL SAGGFSSSAA KVSPAPVASA TQQAGRMFLP EAPVPAKART 180 KRYRAVPGNW SSRHLVLPPT PPSPPSPTSM AISPAESGIS VQAFQAAKKP SKKKDAPQAQ 240 PPSSAPAQSS GSGSAASAEG RRCLHCETDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE 300 YRPAASPTFV MSKHSNSHRK VLELRRQKEM QHGHQPHVMA GNGAGGLMHM QNPLLFDGQP 360 IMAGDDFLVP QHLGPDYRRQ LI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969927.1 | 1e-157 | GATA transcription factor 12 | ||||
TrEMBL | K3XIL3 | 1e-156 | K3XIL3_SETIT; GATA transcription factor | ||||
STRING | Si001735m | 1e-157 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3025 | 31 | 78 |