PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03116.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 216aa MW: 23532.7 Da PI: 10.66 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 84.9 | 7.2e-27 | 48 | 148 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 f+kv tpsdv+k++rlv+pk+fae+h g + ++ l + d +g W+++++y+++s++yv+tkGW+++v++++L + Zmw_sc03116.1.g00050.1.am.mk 48 FEKVVTPSDVGKLNRLVVPKHFAEKHlpllGAAARAGTVLCFHDARGhAAWRFRYSYWGSSQSYVMTKGWSRYVRDKRLAA 128 99****************************878889999*****999799******************************* PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD+v F r++++l++ +r+ Zmw_sc03116.1.g00050.1.am.mk 129 GDTVSFC---RDGARLYIDCRRR 148 *******...4667788888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-34 | 44 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-26 | 46 | 139 | No hit | No description |
SuperFamily | SSF101936 | 4.84E-27 | 46 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.731 | 48 | 149 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-23 | 48 | 148 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-17 | 48 | 149 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MALTLAQESW KSSELGGGAG GLAAEGSNSN QQRPQSHGGG GGVRERLFEK VVTPSDVGKL 60 NRLVVPKHFA EKHLPLLGAA ARAGTVLCFH DARGHAAWRF RYSYWGSSQS YVMTKGWSRY 120 VRDKRLAAGD TVSFCRDGAR LYIDCRRRAK RAQAASLLFG ATAAATPNNN NKAQQPLESA 180 GIIDITGEDA RRGRRLRLFG VDLELRAEPL LLDLQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-41 | 44 | 150 | 4 | 115 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-41 | 44 | 150 | 4 | 115 | B3 domain-containing transcription factor NGA1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681403.1 | 5e-59 | B3 domain-containing protein Os06g0107800 | ||||
Swissprot | Q5VS55 | 5e-56 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | A0A1E5VK67 | 1e-61 | A0A1E5VK67_9POAL; B3 domain-containing protein | ||||
STRING | Pavir.Db02478.1.p | 4e-61 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |