PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03116.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 324aa MW: 34628.1 Da PI: 7.0743

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03116.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.9e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd++++ G ++W++ ++ g++R++k+c++rw +yl Zmw_sc03116.1.g00010.1.am.mkhc 15 KGPWTPEEDKLLVDYIQKNGHRSWRRLPSLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	58.5	1.5e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T eE++l+++++ lG++ W++Ia +++ gRt++++k++w+++l Zmw_sc03116.1.g00010.1.am.mkhc 68 RGRFTDEEEKLIIHLHSILGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.46	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.2E-30	12	109	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-14	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-17	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-24	16	69	IPR009057	Homeodomain-like
CDD	cd00167	2.40E-11	17	62	No hit	No description
PROSITE profile	PS51294	28.063	63	117	IPR017930	Myb domain
SMART	SM00717	4.0E-17	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	1.93E-13	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.3E-27	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGRSPCCDQE SGVKKGPWTP EEDKLLVDYI QKNGHRSWRR LPSLAGLNRC GKSCRLRWTN 60 YLRPDIKRGR FTDEEEKLII HLHSILGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLNM 120 GIDPVTHRLR TDLNLLAGLP NFLAGANNNN TSTWDMNALK LQADAAKFQL LQGLISAIAT 180 AAAPSVDLMA LLAASGGGLT QTVSVDRGSS RSSQYDGFMD LPALTTAPTV SPGMTSFVGL 240 LNGFSGGSAH AGDGLSSTDL GQSGASGSSM TATMAPPLVA AVECNAGAGG ATPCEETPAS 300 SPFQGLENLN LDDLSNDCWK DLLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-30	15	117	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-30	15	117	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-30	15	117	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811879.1	1e-172	transcription factor MYB93-like
Swissprot	Q9S9Z2	2e-79	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A1E5W851	1e-174	A0A1E5W851_9POAL; Transcription factor MYB39
STRING	Si006790m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5529	31	58

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]