PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03109.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 531aa MW: 57742.4 Da PI: 10.2014

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03109.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	155.7	7.8e-49	303	400	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfe 77 +eqdrflPian+srim++++P+n+ki+kdake+vqecvsefisf+tse asdkc +ekrktingddl+w+++tlGfe Zmw_sc03109.1.g00080.1.am.mk 303 KEQDRFLPIANISRIMRRAVPENGKIAKDAKESVQECVSEFISFITSEsvaylASDKCMKEKRKTINGDDLIWSMGTLGFE 383 89*******************************************9887778*********************** PP NF-YB 78 dyveplkvylkkyrele 94 +yveplk+ylk yre++ Zmw_sc03109.1.g00080.1.am.mk 384 EYVEPLKLYLKIYREFQ 400 *************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.5E-45	297	403	IPR009072	Histone-fold
SuperFamily	SSF47113	2.59E-32	305	402	IPR009072	Histone-fold
Pfam	PF00808	7.7E-22	308	377	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.4E-15	336	354	No hit	No description
PRINTS	PR00615	5.4E-15	360	378	No hit	No description
PRINTS	PR00615	5.4E-15	379	397	No hit	No description
Pfam	PF05678	1.6E-9	418	444	IPR008889	VQ
Pfam	PF05678	8.1E-10	464	490	IPR008889	VQ

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MPNHNCAEQT TEQRLLLVSQ ITAGAQDYAN TLQGGIYLFT LDLQRVIEPK TIGGADELSE 60 SITTGEFWLR STSATATTKK TASSRRRRSV PPRHRITASE NLARARGRRP AVQAQPLGSA 120 PAVGVSEIWR ARDFWNGGSG PLRRAAGAEA EPAQGKNWGG RPEDGLVARK ERARVVPNAC 180 RPQSAPRQVK EKKKTAGKRG QPARGMARLL ARDGMLRSDD VGWDCSRYPA AGGVLSARAP 240 PQSTALIPSA ISVSVPVSKK SRHRHRSPLS PLARPYNGGG CCFPVPGFAM SEGEFTQESA 300 GAKEQDRFLP IANISRIMRR AVPENGKIAK DAKESVQECV SEFISFITSE SVAYLASDKC 360 MKEKRKTING DDLIWSMGTL GFEEYVEPLK LYLKIYREFQ PRPAMSRDDE AKPLTVKIIE 420 TVFVEADTAD EFKSVVQRLT GKDAFQPRPA MSRDDEAKPL TVKIIETVFV EADTADEFKS 480 VVQRLTGKDA VAPPEETTGR SPRAAPRIGA GKDGGSRGDR EGGASGTKQN G

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MPNHNCAEQT TEQRLLLVSQ ITAGAQDYAN TLQGGIYLFT LDLQRVIEPK TIGGADELSE  60
SITTGEFWLR STSATATTKK TASSRRRRSV PPRHRITASE NLARARGRRP AVQAQPLGSA  120
PAVGVSEIWR ARDFWNGGSG PLRRAAGAEA EPAQGKNWGG RPEDGLVARK ERARVVPNAC  180
RPQSAPRQVK EKKKTAGKRG QPARGMARLL ARDGMLRSDD VGWDCSRYPA AGGVLSARAP  240
PQSTALIPSA ISVSVPVSKK SRHRHRSPLS PLARPYNGGG CCFPVPGFAM SEGEFTQESA  300
GAKEQDRFLP IANISRIMRR AVPENGKIAK DAKESVQECV SEFISFITSE SVAYLASDKC  360
MKEKRKTING DDLIWSMGTL GFEEYVEPLK LYLKIYREFQ PRPAMSRDDE AKPLTVKIIE  420
TVFVEADTAD EFKSVVQRLT GKDAFQPRPA MSRDDEAKPL TVKIIETVFV EADTADEFKS  480
VVQRLTGKDA VAPPEETTGR SPRAAPRIGA GKDGGSRGDR EGGASGTKQN G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	4e-39	303	398	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	4e-39	303	398	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA