PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03100.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 669aa MW: 72585.8 Da PI: 10.5932

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03100.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	210.9	7.2e-65	119	460	39	374
GRAS 39 qRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDf 117 R+aayf+ ALa+rl+r + +++s+ + +e++ a+++f+++sP+++++h+taNqaI+ea+e +r+H+iDf Zmw_sc03100.1.g00120.1.am.mk 119 VRVAAYFADALASRLLR------SPVAASPR--ATRTEQFLAYTMFYQTSPLYQLAHFTANQAIVEAFEAGgrRRLHVIDF 191 5**************......33333333..35789999***********************9766699**** PP GRAS 118 disqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledleleeLr 195 d + + + ++ + e++ slRiTg+g s++el++t+ rL++fA+ + +++fef+ +v ++ + ++ Zmw_sc03100.1.g00120.1.am.mk 192 DSLSDAAATSTSSS-SDGDgdEPAVSLRITGFGT----SADELRQTEARLTRFASGCaNLRFEFEGIVDGLTSRGRRHDAV 267 8876655443333.3333335566******....9***********97549***644444455555555 PP GRAS 196 vkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflealeyysa 266 vk+ + +++Vnlv+ +r ++s+ ++L v+sl+P v +ve+ ++s+ +l rf+ +l+y++a Zmw_sc03100.1.g00120.1.am.mk 268 VKTedDATVVVNLVFPDERDT----GTSSRECSTLARVRSLNPSFVFLVEKHDGTGSSatsrgptsLLLPRFTACLRYFAA 344 555548899999999554443....34444679*************997776555777888789********* PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 +fdsl++ lp++s er +E+ lg ei+n++a ++ + +h+ + W+ ++e+aGF+ v+ls++a++qaklll++ ++ Zmw_sc03100.1.g00120.1.am.mk 345 VFDSLHECLPADSAERLAIEKNHLGSEISNAIASLDDHhHGDDHTAGAIWKVMMEDAGFEGVKLSSRAVSQAKLLLKMKSG 425 *****************************988874667899999*************************9774 PP GRAS 347 dg.....yrve.eesgslv.lgWkdrpLvsvSaWr 374 g rv +sg ++ lgW+d +L++++aWr Zmw_sc03100.1.g00120.1.am.mk 426 CGagsggLRVVdGDSGKAMsLGWRDSALITATAWR 460 43334455555366777777************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.003	44	433	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-62	119	460	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MNLTLSLGVS NGGAAKKRKL WEGVVDDVED GGDRGRVIMR LLQARERMMA RLEQDDETWM 60 MWPPERPATR KRPPRRCRRS TAARXXXXGG GIRLMHRLLS SVAAGEAGDA QAAAAALQVR 120 VAAYFADALA SRLLRSPVAA SPRATRTEQF LAYTMFYQTS PLYQLAHFTA NQAIVEAFEA 180 GGRRRLHVID FDSLSDAAAT STSSSSDGDG DEPAVSLRIT GFGTSADELR QTEARLTRFA 240 SGCANLRFEF EGIVDGLTSR GRRHDAVVKT EDDATVVVNL VFPDERDTGT SSRECSTLAR 300 VRSLNPSFVF LVEKHDGTGS SATSRGPTSL LLPRFTACLR YFAAVFDSLH ECLPADSAER 360 LAIEKNHLGS EISNAIASLD DHHHGDDHTA GAIWKVMMED AGFEGVKLSS RAVSQAKLLL 420 KMKSGCGAGS GGLRVVDGDS GKAMSLGWRD SALITATAWR RRRSSESFTE PLGLLHLIQI 480 CSEDSAVETS AGKPRRRAWR TTTVSFRDDD DDEEETGSAF CCPQTRRLLY ARAVARLISR 540 AGGVAEYVRK PTRRGSRHRA SLPPRHAGEI PSPSRRRQQP PVRVFVNLAG RPPSVSASRT 600 ARSGRLRPRR VRARAWSVPR LGVVVCVAGA RARACFGGGA GGGSGRGGAR DSDPERIGSD 660 RGRARTEMV

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MNLTLSLGVS NGGAAKKRKL WEGVVDDVED GGDRGRVIMR LLQARERMMA RLEQDDETWM  60
MWPPERPATR KRPPRRCRRS TAARXXXXGG GIRLMHRLLS SVAAGEAGDA QAAAAALQVR  120
VAAYFADALA SRLLRSPVAA SPRATRTEQF LAYTMFYQTS PLYQLAHFTA NQAIVEAFEA  180
GGRRRLHVID FDSLSDAAAT STSSSSDGDG DEPAVSLRIT GFGTSADELR QTEARLTRFA  240
SGCANLRFEF EGIVDGLTSR GRRHDAVVKT EDDATVVVNL VFPDERDTGT SSRECSTLAR  300
VRSLNPSFVF LVEKHDGTGS SATSRGPTSL LLPRFTACLR YFAAVFDSLH ECLPADSAER  360
LAIEKNHLGS EISNAIASLD DHHHGDDHTA GAIWKVMMED AGFEGVKLSS RAVSQAKLLL  420
KMKSGCGAGS GGLRVVDGDS GKAMSLGWRD SALITATAWR RRRSSESFTE PLGLLHLIQI  480
CSEDSAVETS AGKPRRRAWR TTTVSFRDDD DDEEETGSAF CCPQTRRLLY ARAVARLISR  540
AGGVAEYVRK PTRRGSRHRA SLPPRHAGEI PSPSRRRQQP PVRVFVNLAG RPPSVSASRT  600
ARSGRLRPRR VRARAWSVPR LGVVVCVAGA RARACFGGGA GGGSGRGGAR DSDPERIGSD  660
RGRARTEMV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-34	120	462	58	381	Protein SCARECROW
5b3h_A	9e-34	120	462	57	380	Protein SCARECROW
5b3h_D	9e-34	120	462	57	380	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975641.1	0.0	DELLA protein DWARF8
TrEMBL	K3Y6Y1	0.0	K3Y6Y1_SETIT; Uncharacterized protein
STRING	Si009972m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11649	30	38