PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03092.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 263aa    MW: 29152.8 Da    PI: 10.3559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03092.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-1989139256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  Zmw_sc03092.1.g00060.1.am.mk  89 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 139
                                   59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-2788146No hitNo description
PROSITE profilePS5103222.69589146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-3089146IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2289146IPR016177DNA-binding domain
SMARTSM003808.1E-3189152IPR001471AP2/ERF domain
PfamPF008473.4E-1390139IPR001471AP2/ERF domain
PRINTSPR003671.9E-990101IPR001471AP2/ERF domain
PRINTSPR003671.9E-9112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDASLRTLPP ASRFPGEVRS AFSSLRLAPG ASALDTVFSH LPAPVTVPPL GSGVYHRQCE  60
LLRHFAASQP SSSSSSVATF QAPASRQKLY RGVRQRQWGK WVAEIRLPQN RVRVWLGTYD  120
SPETAAHAYD RAAHRLRGEY ARLNFPGYAR LNFPGVMDGR GDCPEDLQPL RAAVDAKIQA  180
IRARLARKRA RARRRREEQR FEGASQAAPT TTKVARPELS EDATTTSDTT TASTTPYGSL  240
DGELPLEHMP SFDPELIWEV LNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1885146163ATERF1
3gcc_A6e-1885146163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185191ARKRARA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808129.17e-98ethylene-responsive transcription factor ERF061
TrEMBLA0A2T7EA691e-96A0A2T7EA69_9POAL; Uncharacterized protein
STRINGORGLA03G0412600.13e-97(Oryza glaberrima)
STRINGORGLA05G0229700.13e-97(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842