PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03086.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 1044aa MW: 112153 Da PI: 9.6633

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03086.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.4	9e-17	873	927	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Zmw_sc03086.1.g00110.1.am.mk 873 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 927 788899***********************************************98 PP
2	HD-ZIP_I/II	123	1.5e-39	873	963	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlskeq+++LEe+F+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ Zmw_sc03086.1.g00110.1.am.mk 873 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 953 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelk 92 ke +eLr +lk Zmw_sc03086.1.g00110.1.am.mk 954 KELAELR-ALK 963 ****9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-16	863	928	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-17	864	930	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	869	929	IPR001356	Homeobox domain
SMART	SM00389	7.1E-15	871	933	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-14	873	927	IPR001356	Homeobox domain
CDD	cd00086	6.08E-16	873	930	No hit	No description
PROSITE pattern	PS00027	0	904	927	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00211	920	961	No hit	No description
SMART	SM00340	1.5E-24	929	972	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.1E-10	929	963	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MLVLLPPPVH DAAGQSSSAP VPISPSDLQL QNCSQLYRVA TAAERFFHGE KKKAGTYYSG 60 SSDGGDERGR RFRFRSSGSG MLGPGMNDAR GSPDPLPFMG QGHEAEACGG QSRRNDCAWR 120 TVGPTSSRHA GWAHASSTPR AAHTEAGFPL VSSAWVPIPL SCPGRPPSVL VSSAKPPLVC 180 AVALGHGEIM GACMQSYPDI VCRRPSPRHQ ISTSRLSSGI CSGLYRVLRP NGFIPLGFYS 240 SYQASGTEEM DRGGWPTTGR DRPRSIRTPA RTQPGCLRQC TTPHHTRQRQ FQDSAGCYGE 300 GLPLLAAAAS WAWGHRAHSR PALSLHRAAP RRAVLWPPIG EPAVGRARVL PQRRVRVQSV 360 GARAPCPLTR HLCSPTASTR VELWARRVIA ASCLGRFLLS HVWCLVTLVD RQCELDRWCD 420 FNNFTGVGGG VGGAWARPPL CLNASSIHAC ITRSGHCDSA ISWRVTKAPE PAPQQRYASV 480 RPATYIVAGG RTGLKDTDWG GPMNLGAVAF TALRRPLHVM TSGSAAARAV TSCATAGRTY 540 TGLQCGSSEE LPRNGRGHGW HAVEDTGGLT QPEPYHPRCC HGAGACPHRI QDLLGRKLGR 600 VSCRAVCHHE ALLRRELEMQ GEEGHFPRRA SSPHCPFCLG HVRRVNRSNP PLSQAHTNTR 660 REERVQGRLA PSCHAAAIKS RRPCEFRRFQ YSTGRMELGL SLGATMADAG RDLVLGLGMG 720 MGVSRREDEG AERRGKSDRE EAAAAPARRE LEFGAGRCGR SSPEPPARLT FLSMEPTLGL 780 PWPSPDTGHL LASTRGFDVN RAPSCATGAA GEEDDERDDA GAGGAAVSSS SPNNSAGSFP 840 TDFSARGQAG TGGRGGDRAC SRASDEDDGG SSRKKLRLSK EQSAFLEENF KEHATLNPKQ 900 KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLQKELAELR 960 ALKTVNPFYM HLPATTLSMC PSCERVSSNS APAPGASAPA AALALSSGGI GDAAPEQRPS 1020 SFAALFSAPL HRPLAAQPQA PAGS

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MLVLLPPPVH DAAGQSSSAP VPISPSDLQL QNCSQLYRVA TAAERFFHGE KKKAGTYYSG  60
SSDGGDERGR RFRFRSSGSG MLGPGMNDAR GSPDPLPFMG QGHEAEACGG QSRRNDCAWR  120
TVGPTSSRHA GWAHASSTPR AAHTEAGFPL VSSAWVPIPL SCPGRPPSVL VSSAKPPLVC  180
AVALGHGEIM GACMQSYPDI VCRRPSPRHQ ISTSRLSSGI CSGLYRVLRP NGFIPLGFYS  240
SYQASGTEEM DRGGWPTTGR DRPRSIRTPA RTQPGCLRQC TTPHHTRQRQ FQDSAGCYGE  300
GLPLLAAAAS WAWGHRAHSR PALSLHRAAP RRAVLWPPIG EPAVGRARVL PQRRVRVQSV  360
GARAPCPLTR HLCSPTASTR VELWARRVIA ASCLGRFLLS HVWCLVTLVD RQCELDRWCD  420
FNNFTGVGGG VGGAWARPPL CLNASSIHAC ITRSGHCDSA ISWRVTKAPE PAPQQRYASV  480
RPATYIVAGG RTGLKDTDWG GPMNLGAVAF TALRRPLHVM TSGSAAARAV TSCATAGRTY  540
TGLQCGSSEE LPRNGRGHGW HAVEDTGGLT QPEPYHPRCC HGAGACPHRI QDLLGRKLGR  600
VSCRAVCHHE ALLRRELEMQ GEEGHFPRRA SSPHCPFCLG HVRRVNRSNP PLSQAHTNTR  660
REERVQGRLA PSCHAAAIKS RRPCEFRRFQ YSTGRMELGL SLGATMADAG RDLVLGLGMG  720
MGVSRREDEG AERRGKSDRE EAAAAPARRE LEFGAGRCGR SSPEPPARLT FLSMEPTLGL  780
PWPSPDTGHL LASTRGFDVN RAPSCATGAA GEEDDERDDA GAGGAAVSSS SPNNSAGSFP  840
TDFSARGQAG TGGRGGDRAC SRASDEDDGG SSRKKLRLSK EQSAFLEENF KEHATLNPKQ  900
KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLQKELAELR  960
ALKTVNPFYM HLPATTLSMC PSCERVSSNS APAPGASAPA AALALSSGGI GDAAPEQRPS  1020
SFAALFSAPL HRPLAAQPQA PAGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	871	877	SRKKLRL
2	921	929	RRARTKLKQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5209	33	63