PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03085.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 254aa MW: 28312.5 Da PI: 5.3699 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 55 | 108 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e++eLA+ lgL+ rqV +WFqN+Ra+++ Zmw_sc03085.1.g00040.1.am.mk 55 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARDLGLQPRQVAIWFQNKRARWR 108 458**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.4 | 2.6e-40 | 53 | 146 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 e+krr+++eq+++LE++F++++ kLep++K+elar+Lglqprqva+WFqn+RAR+++kqlE+dy+aLk++ydal++ e+L Zmw_sc03085.1.g00040.1.am.mk 53 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARDLGLQPRQVAIWFQNKRARWRSKQLEHDYAALKSKYDALHACVESL 133 69******************999********************************************************** PP HD-ZIP_I/II 81 ekeveeLreelke 93 ++e+ +L+++l+e Zmw_sc03085.1.g00040.1.am.mk 134 KQEKLALTAQLHE 146 *********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.83E-18 | 41 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 49 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-19 | 52 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.67E-17 | 54 | 111 | No hit | No description |
Pfam | PF00046 | 4.6E-17 | 55 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 55 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-6 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-6 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.5E-14 | 110 | 151 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDLSDHHQHQ FFVPPQPQPQ QLCVQTMMDA EQSFLVGRGG GAGGGVAAGM RGERKRRFTE 60 EQIRSLESMF HAHHAKLEPR EKAELARDLG LQPRQVAIWF QNKRARWRSK QLEHDYAALK 120 SKYDALHACV ESLKQEKLAL TAQLHELNER LREREDRARS SAGVAATASS SSCNGGGEEE 180 VEDDKRNVLA GCVDMEPPES CVLGGPCATP ADVSVGSEYD DHHVDYDHGF PESFCAATPE 240 LWEPWPLVEW NAVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976404.1 | 1e-121 | homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q01IK0 | 2e-96 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 2e-96 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A368RX29 | 1e-120 | A0A368RX29_SETIT; Uncharacterized protein | ||||
STRING | Si010550m | 1e-118 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |