PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03080.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 536aa MW: 55809.7 Da PI: 8.5311 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.5 | 1.5e-28 | 249 | 298 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Zmw_sc03080.1.g00120.1.am.mk 249 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 298 9************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.12E-13 | 246 | 299 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-25 | 247 | 298 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.1E-21 | 249 | 299 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-5 | 250 | 298 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MEASSAASPD LSLHISLPST GPSGGRAVAG GAGGGAGGDP WRRLNGSTAS TELSLSPPAE 60 PDADALPWRH RPSAVASSSA ATTSSALMHV PMLQPLDDGG GAAGGGVDVS AAPPIRGIPI 120 YNGPGGFPFL PPVPGGDGHQ KVGFYGSYHH PATWPSSLGS TMPSPLAPGA SSFDPASVFL 180 SPAAHHHHRM LSASGRFNGM LTDTLRGYGA GGMGGIGGHH HHHLHGAQPF GLGSRFMPKF 240 PAKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQLL 300 PFLLLFGSDK NANAVTPELV NDGETDGWGL AAKKLPLLWG ERERERKLAY VCARTAQSSR 360 TMAREREGKG IAATGGREGP RRGHGIMVFP SVHFLVFLAL IHLLVIRLLV SSLREVVKLI 420 AAFLGMYRTV KSTDKPAASS GPADGGSGDD EFSGASQAAS GGDNMCVRPF GEHRSTSEGA 480 ASSVGGCGGD MDQSSAGNTN IRWGNSSSSQ VSNHELSSPS LEFTLGRPDW QGADHD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353566.1 | 1e-117 | uncharacterized protein LOC100280930 isoform 1 | ||||
Swissprot | Q0J235 | 6e-84 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A1D6I3X2 | 1e-116 | A0A1D6I3X2_MAIZE; Milkweed pod1 | ||||
TrEMBL | B5LZ60 | 1e-116 | B5LZ60_MAIZE; Milkweed pod1 | ||||
STRING | GRMZM2G082264_P01 | 1e-117 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |