PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03061.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 598aa MW: 61624.2 Da PI: 5.5745

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03061.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.3e-06	28	58	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.a 30 +rr+ +e+Er RR+ + ++eL l+P + Zmw_sc03061.1.g00040.1.am.mk 28 KRRKTPEIERARRRTMSGLYAELAALIPGvP 58 79999***********************744 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.48E-4	25	58	No hit	No description
PROSITE profile	PS50888	8.746	27	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF51126	1.17E-113	221	597	IPR011050	Pectin lyase fold/virulence factor
Gene3D	G3DSA:2.160.20.10	1.6E-123	221	597	IPR012334	Pectin lyase fold
Pfam	PF00295	1.8E-94	259	584	IPR000743	Glycoside hydrolase, family 28
SMART	SM00710	2200	316	338	IPR006626	Parallel beta-helix repeat
SMART	SM00710	3.6	377	403	IPR006626	Parallel beta-helix repeat
SMART	SM00710	370	404	425	IPR006626	Parallel beta-helix repeat
SMART	SM00710	6000	427	447	IPR006626	Parallel beta-helix repeat
SMART	SM00710	4	457	478	IPR006626	Parallel beta-helix repeat
SMART	SM00710	2300	488	509	IPR006626	Parallel beta-helix repeat
SMART	SM00710	3000	524	564	IPR006626	Parallel beta-helix repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004650	Molecular Function	polygalacturonase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MVGGEAPVTP SLAAEGKRSP ATAAPSSKRR KTPEIERARR RTMSGLYAEL AALIPGVPAR 60 VSSPPVQRLL LLCSIVLDRV LTCRARGDGA GEMTTDGDGG AGPVVESSVD ASCFAVRLPA 120 ARRLDSLSRV IEVLHRHGVA VLAAAVTSDG GEAAVTVTTS AVAPSAVERI KADISSCIPG 180 DEGLPACATE MASARDAIRA LFVLAAVCAA SATKRPGPSK ADAPAAAPAG TFDITKLGAA 240 DDGKTDSTKA VMEAWTSACA ATGSATLLIP AGDYLVGPLG FTGPCKGDVT IQVDGTLLGT 300 NDLTKYKASW IEVTRVDNIV ITGSGTLDGQ GKAVYIKDST ELKAMPNTLV LYYVTNGTVS 360 GIKLFNSKFF HINIDKSKDI TVKDVTITAP GDVENTDGVH VVDSSNVTIT NSSIGTGDDC 420 VSIGPGCAGV TVSGVTCGPG QGISVGCLGR YKDEKDVSNV TVCDCVLKGT TNGVRIKSYE 480 DAESVITASH MTFENIRMED VANPIIIDQY YCPEKVCPGK QDSTSHVVVK DVVFRNITGT 540 SSTPEAVSLL CSESQPCSGV ELIDVKVEYA GKNNKTMAVC SNAKGIAKGS ISALACLL

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MVGGEAPVTP SLAAEGKRSP ATAAPSSKRR KTPEIERARR RTMSGLYAEL AALIPGVPAR  60
VSSPPVQRLL LLCSIVLDRV LTCRARGDGA GEMTTDGDGG AGPVVESSVD ASCFAVRLPA  120
ARRLDSLSRV IEVLHRHGVA VLAAAVTSDG GEAAVTVTTS AVAPSAVERI KADISSCIPG  180
DEGLPACATE MASARDAIRA LFVLAAVCAA SATKRPGPSK ADAPAAAPAG TFDITKLGAA  240
DDGKTDSTKA VMEAWTSACA ATGSATLLIP AGDYLVGPLG FTGPCKGDVT IQVDGTLLGT  300
NDLTKYKASW IEVTRVDNIV ITGSGTLDGQ GKAVYIKDST ELKAMPNTLV LYYVTNGTVS  360
GIKLFNSKFF HINIDKSKDI TVKDVTITAP GDVENTDGVH VVDSSNVTIT NSSIGTGDDC  420
VSIGPGCAGV TVSGVTCGPG QGISVGCLGR YKDEKDVSNV TVCDCVLKGT TNGVRIKSYE  480
DAESVITASH MTFENIRMED VANPIIIDQY YCPEKVCPGK QDSTSHVVVK DVVFRNITGT  540
SSTPEAVSLL CSESQPCSGV ELIDVKVEYA GKNNKTMAVC SNAKGIAKGS ISALACLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bhe_A	1e-20	321	538	113	334	POLYGALACTURONASE
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	40	RRKTPEIERARRR

Functional Description ? help Back to Top
Source	Description
UniProt	May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455693.1	0.0	exopolygalacturonase
Swissprot	P35339	1e-180	PGLR3_MAIZE; Exopolygalacturonase
TrEMBL	C5XLH9	0.0	C5XLH9_SORBI; Uncharacterized protein
STRING	Sb03g021050.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP407	2	3

Publications ? help Back to Top
Barakate A,Martin W,Quigley F,Mache R Characterization of a multigene family encoding an exopolygalacturonase in maize. J. Mol. Biol., 1993. 229(3): p. 797-801 [PMID:8433375]