PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03044.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 338aa MW: 37270.6 Da PI: 4.535

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03044.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.9	1.7e-20	87	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +g++GVr++ +g+WvAeIr+p + r +lg+f taeeAa+a+++a+++++g Zmw_sc03044.1.g00090.1.sm.mkhc 87 CGFRGVRQRT-WGKWVAEIREP-----NqiNRLWLGTFPTAEEAARAYDQAARAMYG 137 79***999.******9.....3359*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.0E-14	87	137	IPR001471	AP2/ERF domain
CDD	cd00018	3.79E-32	87	145	No hit	No description
SMART	SM00380	5.1E-35	88	151	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.168	88	145	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.38E-21	88	145	IPR016177	DNA-binding domain
PRINTS	PR00367	2.1E-10	89	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-31	89	146	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-10	111	127	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MTVDQKAAMP SQSQMQQVQP LQPGRKKRPR RSRDGPNSVT AVIQRWAQMN QELEHNPEAA 60 KKPRKAPAKG SKKGCMKGKG GPENTVCGFR GVRQRTWGKW VAEIREPNQI NRLWLGTFPT 120 AEEAARAYDQ AARAMYGALA RTNFPSPAPT STQAIPAAVE VVQPVSVSCE STMTSNRSDI 180 VSLHKPDSDI STTINSRVEP LETVPHEPKM KSDTLDQNDG GDLGPEAGTS SVADEVFEPL 240 EPIANLPLGD EGVFDIKELL RMMEADPQNK GSSDRTNEGG TEAETEQLFF TDLDSSVLEN 300 MLQSEPELWL MSDDPDMYLT GFQNPDFFEG YDFLEGLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-15	89	145	15	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269\|PubMed:20049613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269\|PubMed:20049613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302434.1	1e-117	dehydration-responsive element-binding protein 2B-like isoform X4
Swissprot	Q5W6R4	2e-80	DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBL	A0A1N7TB58	0.0	A0A1N7TB58_9POAL; Transcription factor DREB2.3
STRING	Si022619m	1e-112	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11515	30	37

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]