PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03024.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 276aa MW: 29948.4 Da PI: 5.1741 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.9 | 2.8e-09 | 208 | 256 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 k+ +++++ g W A+I + +k +lg+f t+eeA +a++ a+ k++g Zmw_sc03024.1.g00090.1.sm.mkhc 208 KNMTRHHQHGWWQARIGRVAG---NKDLYLGTFSTEEEATEAYDIAAIKFRG 256 66789999999****988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.124 | 116 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.817 | 206 | 264 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-20 | 211 | 270 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-14 | 211 | 265 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-14 | 212 | 264 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.88E-19 | 212 | 266 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MDTTHNYPWL NFSLAHHCDL EEQERGSAAE LAAIAGAAPP PKLEDFLGGA VNNGGGGCMV 60 SGAETAAAEM YDSELKFIAP GFLSGAAGAA APSVSSLEQA DAKLALPAAA APAPEERKAV 120 DSFGQRTFIC RGTAGYEAHL WDNSCWREGQ SRNGRQGGYV NEDKAARAYD LTALKYWGPN 180 HHQLSGMHTD KPMHMLVAEY EKELEEMKNM TRHHQHGWWQ ARIGRVAGNK DLYLGTFSTE 240 EEATEAYDIA AIKFRGPNAV TNFEIALLSF VTPSFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822847.1 | 1e-102 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 9e-73 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A3L6QA03 | 1e-104 | A0A3L6QA03_PANMI; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | Pavir.Gb00275.1.p | 1e-106 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Publications ? help Back to Top | |||
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