PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03022.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 77aa MW: 8764.03 Da PI: 11.3082

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03022.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.8	1.6e-10	5	34	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT+eE++ l ++v ++G g W+tI + Zmw_sc03022.1.g00010.1.am.mk 5 KQKWTQEEEDALRRGVLKHGAGKWRTIQKD 34 79*************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.73E-11	2	50	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.249	5	50	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.2E-11	5	50	IPR009057	Homeodomain-like
Pfam	PF00249	7.4E-8	5	33	IPR001005	SANT/Myb domain
CDD	cd11660	1.01E-13	6	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MGAPKQKWTQ EEEDALRRGV LKHGAGKWRT IQKDPEFSPT LSSRSNIDLK VPSPAPARHS 60 LPTWWSRRPS SLIFLLS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969705.1	7e-27	single myb histone 4
Swissprot	Q6WLH4	4e-26	SMH3_MAIZE; Single myb histone 3
TrEMBL	A0A2S3HSG5	1e-25	A0A2S3HSG5_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DHT0	1e-25	A0A2T7DHT0_9POAL; Uncharacterized protein
TrEMBL	K3XKP4	2e-25	K3XKP4_SETIT; Uncharacterized protein
STRING	Pavir.Eb02802.1.p	3e-26	(Panicum virgatum)
STRING	Si002467m	3e-26	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25616	3	5

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]