PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03016.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CO-like | ||||||||
Protein Properties | Length: 536aa MW: 58621.2 Da PI: 9.1293 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.3 | 2.3e-06 | 236 | 268 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee..H 34 r C+ ++ + ++l+C+ + +lC+ C H Zmw_sc03016.1.g00110.1.am.mk 236 RPCDACGAEAARLYCRADAAFLCAGCXXXXsrH 268 68************************9876666 PP | |||||||
2 | zf-B_box | 21.5 | 4.9e-07 | 271 | 313 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ +e+ +++ C+ + lC++C +H+ H++ Zmw_sc03016.1.g00110.1.am.mk 271 VWLCEVCEHAPASVTCRADAAALCASCDADIHSAnplarrHER 313 679*****************************65777777775 PP | |||||||
3 | CCT | 68.9 | 1.3e-23 | 453 | 496 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Zmw_sc03016.1.g00110.1.am.mk 453 REARLMRYREKRKSRRFEKTIRYASRKACAETRPRIKGRFAKRT 496 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.0E-4 | 233 | 273 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.855 | 233 | 268 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.68E-6 | 236 | 273 | No hit | No description |
PROSITE profile | PS50119 | 10.395 | 269 | 316 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-5 | 271 | 315 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.86E-7 | 272 | 316 | No hit | No description |
SMART | SM00336 | 9.5E-10 | 274 | 316 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.7E-18 | 453 | 495 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.618 | 453 | 495 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MQPFSTTTTL AKYQSPEALD LQNVLDAIIL PLSVPPRARI ADTAGEQPSR RPMEIRATSR 60 QPMARCHLFP RRLRRWEWDG RPPPTHGPPV PVASHNLPCL NARPIFLRQR PAFPHPARGR 120 RRCVNHRAYV PVGVGFYRLY RARSRGLDRS GEAGVRLGDG EARKAGTGKH GHWRTNSAPA 180 RRESDSRGQH CLHVAPATAR YELHCRVRRC RQFRVIAMAG DEKSSVGGSY WGLNTRPCDA 240 CGAEAARLYC RADAAFLCAG CXXXXSRHAR VWLCEVCEHA PASVTCRADA AALCASCDAD 300 IHSANPLARR HERFPVAPFY GALADAPKPF ASSAAAAPKP GAAVDDDRSN EAEAASWLLP 360 EPDHGQKDGS SAEVFFADSD TYLDLDFARS MDDVKAIGVQ NCPPEMDLTG AKLFYPDHSV 420 NHSVSSSEAA VVPDAAAASA APPAPVVSRG REREARLMRY REKRKSRRFE KTIRYASRKA 480 CAETRPRIKG RFAKRTSAGA AAEAEEEHDE EMYSSAAAAL LAPAAADVDY GVVPTF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825843.1 | 1e-161 | zinc finger protein CONSTANS-LIKE 3-like | ||||
TrEMBL | A0A2T7CWV6 | 1e-160 | A0A2T7CWV6_9POAL; Uncharacterized protein | ||||
STRING | AC233888.1_FGP002 | 1e-157 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |