PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03012.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 261aa MW: 28930.7 Da PI: 10.0408 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.8e-18 | 81 | 133 | 3 | 55 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa++ Zmw_sc03012.1.g00110.1.am.mk 81 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARK 133 67789**********************************************97 PP | |||||||
2 | HD-ZIP_I/II | 77.8 | 1.8e-25 | 81 | 134 | 2 | 55 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRAR + Zmw_sc03012.1.g00110.1.am.mk 81 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARKH 134 9***************************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 60 | 135 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-18 | 72 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-14 | 78 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.08E-13 | 79 | 136 | No hit | No description |
Pfam | PF00046 | 3.7E-15 | 81 | 133 | IPR001356 | Homeobox domain |
Pfam | PF02183 | 3.9E-10 | 168 | 201 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.1E-23 | 168 | 211 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGATSPSAPS GLELTMAVPG LSSSSGSEGF AGCNNNSNGG TGNSHVRMDL DMNQPASGGE 60 EEMGSVEEDE EERGGGPHRP KKLRLSKEQS RLLEESFRLN HTLTPKQKEA LAVKLKLRPR 120 QVEVWFQNRR ARKHREDEAI ENVTDRAPSF PCEAIGHRSS RRRRTKLKQT EMECEYLKRC 180 FGSLTEENRR LQREVEELRA MRVAPPTVLS PHTRQPLPAS ALTMCPRCER ITAATGPPAA 240 RTARSPPAAS LFHPRRPSAA F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 168 | RRRRTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645561.1 | 1e-114 | homeobox-leucine zipper protein HOX3 isoform X1 | ||||
Swissprot | Q0JKX1 | 1e-115 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 1e-115 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A2T7DJ80 | 1e-120 | A0A2T7DJ80_9POAL; Uncharacterized protein | ||||
STRING | ORUFI01G27220.1 | 1e-113 | (Oryza rufipogon) | ||||
STRING | OS01T0643600-00 | 1e-113 | (Oryza sativa) | ||||
STRING | ONIVA01G27550.1 | 1e-113 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |