PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc03003.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 200aa MW: 22571.9 Da PI: 10.6192 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.9 | 4.7e-28 | 19 | 69 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt eLH++F++a+e LGG++kAtPk il++m+ kgLt++hvkSHLQk Zmw_sc03003.1.g00050.1.sm.mk 19 PRMRWTAELHRSFLQAIECLGGQDKATPKLILRFMGAKGLTISHVKSHLQK 69 9*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 15 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.075 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-15 | 16 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-22 | 19 | 69 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-7 | 20 | 69 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MGSGGRNGAV RRYNRSKEPR MRWTAELHRS FLQAIECLGG QDKATPKLIL RFMGAKGLTI 60 SHVKSHLQKR EVWTVWRRKR AEMGTEASYK GMQGSQGISE MRTAANQYYC MHDYMQAMAM 120 EGRIKQEGLR WQRDAAAAAA ADVVSSLQTV GCLVQESGSF KVQALHFHDA GGSKLRPRRG 180 LLAERKQLYH LGFADKEELQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 20 | 69 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 20 | 69 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-16 | 20 | 69 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 20 | 69 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 20 | 69 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 20 | 69 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 20 | 69 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 20 | 69 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 20 | 69 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 20 | 69 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 20 | 69 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 20 | 69 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652650.1 | 9e-62 | PREDICTED: uncharacterized protein LOC102700890 | ||||
TrEMBL | J3M0G9 | 2e-60 | J3M0G9_ORYBR; Uncharacterized protein | ||||
STRING | OB04G28940.1 | 4e-61 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 |