PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02996.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 241aa MW: 27176.8 Da PI: 7.5324

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02996.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	44.1	4.5e-14	41	68	28	55
G2-like 28 tPktilelmkvkgLtlehvkSHLQkYRl 55 Pk+il+lm+v+gLt+e+v+SHLQkYRl Zmw_sc02996.1.g00020.1.sm.mk 41 GPKKILDLMNVPGLTRENVASHLQKYRL 68 6**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	5.12E-5	12	38	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	9.0E-6	12	38	No hit	No description
SuperFamily	SSF46689	4.3E-8	31	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-14	39	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-11	40	68	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MALFDATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEEG GPKKILDLMN VPGLTRENVA 60 SHLQKYRLYL SRLQKQNDER MMRAIRQDLS HKGPSDNLNL GSSFQEQPGD VTNRFQHGSQ 120 KIQAQANMLD SHIEDKKVPD KNRTLVSGVT DSQNVTGASP LGGLLSFERK PVNQDRKQSD 180 TRILDCQSWR GNVAPKQFMQ CPKHNHEHCD LTGDYSCLPK LDSELSTAPG HLYAPSPCDL 240 D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817738.1	1e-103	two-component response regulator ORR26
Swissprot	Q5N6V8	5e-94	ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBL	A0A1E5VJT1	1e-119	A0A1E5VJT1_9POAL; Two-component response regulator ORR26
STRING	Pavir.J23046.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5900	37	52

Publications ? help Back to Top
Du L, et al. The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction. Genomics, 2007. 89(6): p. 697-707 [PMID:17408920]