PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02994.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 317aa MW: 32891.8 Da PI: 6.5027

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02994.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	30.5	1.2e-09	41	111	37	89
TCP 37 deLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssasnsssg........... 88 d+LG+d++sk++ WL+ +a +ai++l+++ ++s+++ s+g Zmw_sc02994.1.g00090.1.sm.mk 41 DRLGVDQPSKAVAWLIGAAAAAIDALPSLdrfsfalppavadaddagA-----------EVSASE-TSKGsvlslvnapae 109 9****************************9888866554443332220...........222222.222223334333222 PP TCP 89 .k 89 + Zmw_sc02994.1.g00090.1.sm.mk 110 iA 111 20 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-7	41	119	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MCSANARILR CFFFLSSWGT GPMGNQKSYP VRNVDGRTTE DRLGVDQPSK AVAWLIGAAA 60 AAIDALPSLD RFSFALPPAV ADADDAGAEV SASETSKGSV LSLVNAPAEI AVPAAAHQTN 120 HAVHAYSGNA GGGGAFAQPL HCAATDDDNK GSVLSLVNAP AEIAVPAAAH QTNHAVHAYS 180 GNAGGGGAFA QPLHCAATDD DKSMRQKGPP TLACYAAQTP SPYITPARNL GTMPQLAFLH 240 EEQQQQPAVV FGLGTLQSNA VAAPLWPPAQ QHPFLLQRFT SADAAGLPFF LGDGAAPVTS 300 SADRRVQFWN FKQERKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963209.1	1e-51	transcription factor PCF8
TrEMBL	A0A3L6T289	2e-53	A0A3L6T289_PANMI; Transcription factor PCF8

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11553	26	38