PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02985.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 765aa MW: 86173.1 Da PI: 6.4488

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02985.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	232	337	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCka 64 Y++YA+++GF+ ++++ ++ +g +++tf+C+ gk++ + +ek++r+ a ++tgCka Zmw_sc02985.1.g00050.1.am.mk 232 LYKAYAYRTGFHAVRRTCHNY--EGLRYRSTFTCTYGGKPRAGAAScdspatryplrskrevvaQEKKSRRGAAEKTGCKA 310 6*********999998887..7888**********9999999***********999999999***** PP FAR1 65 klkvkkek.dgkwevtkleleHnHela 90 +l ++ ++ d+kw+v++++leHnH+++ Zmw_sc02985.1.g00050.1.am.mk 311 MLIIRDKRvDDKWKVESVDLEHNHPCT 337 **999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-17	232	337	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-23	464	558	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MALLTKILYE HGNSHSRTNN PNGPACRPPG HADLPHPPCA AAPSSSQAQI LSSPSNKLPS 60 SSLHPHTSAP FLHPQKNSLL FPGDVPTPVA LAQIGTPFTA TRSVRCPAPF PAPPYRFPRR 120 TLAIPRREAG AESMGEGSEE RVAAALNPSL DDEDEEARRV KEEVADDLNG DPAEEEEDDE 180 EVIVEEDEDE DEAAIDSDDG QGVDNFVPRT LEEALVPRVG MVFDSVDEAF ALYKAYAYRT 240 GFHAVRRTCH NYEGLRYRST FTCTYGGKPR AGAASCDSPA TRYPLRSKRE VVAQEKKSRR 300 GAAEKTGCKA MLIIRDKRVD DKWKVESVDL EHNHPCTPDM VRFLKAYREM PESAKKKAKI 360 TDEMDEAVEK SLSEIAETRK FPTRSKRGAS GGAGVGSQKF SRMESYAQRF REEDLVALKK 420 FIETMQHGKP DFIHSWDLDQ ESRVKNFFWT DSRAQTQYHY FGDVITLDVM YLQHSCAGLP 480 LATILGVNNH GHLVLLGCGL LSSDSKENYV WLLKRWLSCM NGKPPEAITT SYLDVIAEAV 540 AEVFPNSRHR FCFWHILKKL LENVGRTQEK EAISSRFKEV VYDSVTLTDF EKEWGAMVDQ 600 YKLKDNEWFS ALYNCRKQWA PGYVNHSFWA GTSAIRKIDK PDPYFDGVVT IKTTVPVFLE 660 QYKATLKGKL EREAYDDLRS YYSRLTLLSG LPFEEQLVEL YTGDRRLDPN MASNSSAITH 720 GEVLIHGDRR IEMNMASPHL TQRERRVDMN MVSPHLIQGD RAPKG

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MALLTKILYE HGNSHSRTNN PNGPACRPPG HADLPHPPCA AAPSSSQAQI LSSPSNKLPS  60
SSLHPHTSAP FLHPQKNSLL FPGDVPTPVA LAQIGTPFTA TRSVRCPAPF PAPPYRFPRR  120
TLAIPRREAG AESMGEGSEE RVAAALNPSL DDEDEEARRV KEEVADDLNG DPAEEEEDDE  180
EVIVEEDEDE DEAAIDSDDG QGVDNFVPRT LEEALVPRVG MVFDSVDEAF ALYKAYAYRT  240
GFHAVRRTCH NYEGLRYRST FTCTYGGKPR AGAASCDSPA TRYPLRSKRE VVAQEKKSRR  300
GAAEKTGCKA MLIIRDKRVD DKWKVESVDL EHNHPCTPDM VRFLKAYREM PESAKKKAKI  360
TDEMDEAVEK SLSEIAETRK FPTRSKRGAS GGAGVGSQKF SRMESYAQRF REEDLVALKK  420
FIETMQHGKP DFIHSWDLDQ ESRVKNFFWT DSRAQTQYHY FGDVITLDVM YLQHSCAGLP  480
LATILGVNNH GHLVLLGCGL LSSDSKENYV WLLKRWLSCM NGKPPEAITT SYLDVIAEAV  540
AEVFPNSRHR FCFWHILKKL LENVGRTQEK EAISSRFKEV VYDSVTLTDF EKEWGAMVDQ  600
YKLKDNEWFS ALYNCRKQWA PGYVNHSFWA GTSAIRKIDK PDPYFDGVVT IKTTVPVFLE  660
QYKATLKGKL EREAYDDLRS YYSRLTLLSG LPFEEQLVEL YTGDRRLDPN MASNSSAITH  720
GEVLIHGDRR IEMNMASPHL TQRERRVDMN MVSPHLIQGD RAPKG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797820.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2T8I5H8	0.0	A0A2T8I5H8_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I5H9	0.0	A0A2T8I5H9_9POAL; Uncharacterized protein
STRING	Pavir.Ia03886.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967