PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02980.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 445aa MW: 46634.6 Da PI: 10.9751

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02980.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.9	9e-35	281	444	8	126
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssssa+ + Zmw_sc02980.1.g00070.1.am.mk 281 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSSAHYQ 361 49********************************************************99998444222233333333322 PP TCP 86 ssg..........................................kaaksaakskksqksaasalnlakesrakararare 124 +++ + +++a++ + +a++lnl + +a a ra+e Zmw_sc02980.1.g00070.1.am.mk 362 QQQtvlgkrpreesdatvsvaaaasafwaalptsvprsteaswgfSPLEAQATTTYVPMAQAHHLNLIAALSAGAARRAEE 442 222344555555566666666666666666666666666666666444444433333333444566666666666666666 PP TCP 125 rt 126 +t Zmw_sc02980.1.g00070.1.am.mk 443 ET 444 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-30	280	367	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	281	335	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MSTVAAPSFP LVVSSLHGVS DHKSPTVTLT ANEFSVTDGN DAVRMGDPIQ LYAESELATQ 60 TRTLSKTRKA TLVARPFAPP FQHRSSSEAV SLFRYDNGSQ PHRQRRPLAR AVDFIIPDAG 120 VSPSVGRSRH SVVTPPGLPC SRLTAATQPC VQPCTRPSRP GDGPPRGPGP HARRQPLTPK 180 SGGASCTAPR VDVHSSGMQL GGMPSPATIW ISPLSNATRQ PTGAMATRDV STAAAAAAAA 240 SMFHVYQPWQ VPSTAVTAAA TDGALAVPAT TPGKKKASQG GKDRHSKVNG RGRRVRMPIV 300 CAARVFQLTR ELGLKSDGQT IEWLLRQAEP SILAATGSGT TPAVFVSSSA PSTSSSSAHY 360 QQQQTVLGKR PREESDATVS VAAAASAFWA ALPTSVPRST EASWGFSPLE AQATTTYVPM 420 AQAHHLNLIA ALSAGAARRA EEETR

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MSTVAAPSFP LVVSSLHGVS DHKSPTVTLT ANEFSVTDGN DAVRMGDPIQ LYAESELATQ  60
TRTLSKTRKA TLVARPFAPP FQHRSSSEAV SLFRYDNGSQ PHRQRRPLAR AVDFIIPDAG  120
VSPSVGRSRH SVVTPPGLPC SRLTAATQPC VQPCTRPSRP GDGPPRGPGP HARRQPLTPK  180
SGGASCTAPR VDVHSSGMQL GGMPSPATIW ISPLSNATRQ PTGAMATRDV STAAAAAAAA  240
SMFHVYQPWQ VPSTAVTAAA TDGALAVPAT TPGKKKASQG GKDRHSKVNG RGRRVRMPIV  300
CAARVFQLTR ELGLKSDGQT IEWLLRQAEP SILAATGSGT TPAVFVSSSA PSTSSSSAHY  360
QQQQTVLGKR PREESDATVS VAAAASAFWA ALPTSVPRST EASWGFSPLE AQATTTYVPM  420
AQAHHLNLIA ALSAGAARRA EEETR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100