PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02967.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 428aa    MW: 46870.5 Da    PI: 10.5923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02967.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.62.9e-29242347190
                                   EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltk 63 
                                   f+k+ tpsdv+k++rlv+pk++ae+h                  +g + +++ l +ed sg++W+++++y+++s++yvlt+
  Zmw_sc02967.1.g00140.1.am.mk 242 FDKTVTPSDVGKLNRLVIPKQHAEKHfplhlpaaaaaavdddvvSG-ECKGVLLNFEDASGKVWRFRYSYWNSSQSYVLTR 321
                                   89***************************99998888888777522.34899***************************** PP

                                   THHHHHHHHT--TT-EEEEEE-SSSEE CS
                            B3  64 GWkeFvkangLkegDfvvFkldgrsef 90 
                                   GW++Fvk++gL +gD v F++    ++
  Zmw_sc02967.1.g00140.1.am.mk 322 GWSRFVKEKGLHAGDAVGFYRRA-AGK 347
                                   ********************533.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-38237362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-29240347IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-27240351No hitNo description
PROSITE profilePS5086312.478242357IPR003340B3 DNA binding domain
SMARTSM010191.0E-19242357IPR003340B3 DNA binding domain
PfamPF023625.6E-26242348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MTAPRSDQRL VGGDAPVDPA SARTGKAERE AAGLLVGLPA SLWEEWTGWS TLHVNATPRP  60
RAPVSQSRLL LPRTPTRRSH AVWGRPPLSS PEPTCAAAWR VSPRPARAGT EPAPGEWQRV  120
RVQSSARASV VAPVACSPSY RLVTCPLRWI TIVCRFRGRD AVTNFRPLAD SDPDDAAELR  180
FLAARTKVEV VDMLRKHTYL DELAQNRRAF AAVAPPPSPS TNGPADSSPH PQPPSAAREH  240
LFDKTVTPSD VGKLNRLVIP KQHAEKHFPL HLPAAAAAAV DDDVVSGECK GVLLNFEDAS  300
GKVWRFRYSY WNSSQSYVLT RGWSRFVKEK GLHAGDAVGF YRRAAGKQLY IDCKVRSRKT  360
SPPGPVKAVR LFGVDLLTST PSPASAAATL QEEMTTMAMK NKRPRDFIVT SSTPHMFFKK  420
QCVDLALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-4623935711118DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.11e-129AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-109Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A2T7EAR21e-128A0A2T7EAR2_9POAL; Uncharacterized protein
STRINGPavir.Ca01826.1.p1e-129(Panicum virgatum)
STRINGPavir.J13012.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]