PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02951.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 87aa MW: 9138.51 Da PI: 7.342

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02951.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.6	4.9e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGApsV+Ca+C++V Zmw_sc02951.1.g00060.1.sm.mkhc 7 CHGCRSLLLYPRGAPSVCCAVCHAV 31 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.0E-13	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-11	7	31	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MQSQIVCHGC RSLLLYPRGA PSVCCAVCHA VTSVPPPDAH VATQSILSDK PRNQSQNVTV 60 VVENPMTVDE KGKLVSNVVV GVTTGDP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010904648.1	4e-24	protein LSD1 isoform X2
Swissprot	Q2QMB3	1e-21	LOL2_ORYSJ; Protein LOL2
TrEMBL	A0A0E0KGN6	5e-32	A0A0E0KGN6_ORYPU; Uncharacterized protein
STRING	OMERI03G23730.1	2e-31	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22220	4	7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wu J, et al. OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. Plant J., 2014. 80(6): p. 1118-30 [PMID:25353370]