PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02951.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 777aa MW: 84111.2 Da PI: 6.8089

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02951.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.2	6.2e-07	8	54	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A r+R++ ++e +L++ +L+a Nk L +e+++l+k+v++l +++ Zmw_sc02951.1.g00010.1.sm.mkhc 8 AGRCREKQRKESSRLQTVNRKLSAMNKLLMEENDRLQKQVSRLVDDN 54 679*************************************9997765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14686	2.10E-5	10	48	No hit	No description
PROSITE profile	PS50848	27.397	97	297	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	8.8E-23	105	289	IPR023393	START-like domain
SMART	SM00234	3.2E-43	106	316	IPR002913	START domain
Pfam	PF01852	6.6E-50	107	314	IPR002913	START domain
SuperFamily	SSF55961	8.79E-35	107	317	No hit	No description
SuperFamily	SSF55961	7.42E-5	354	440	No hit	No description
SuperFamily	SSF55961	7.42E-5	468	540	No hit	No description
Pfam	PF08670	5.0E-35	641	776	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence Send to blast
TEHCLLDAGR CREKQRKESS RLQTVNRKLS AMNKLLMEEN DRLQKQVSRL VDDNGCMRNQ 60 LHKASAAITD TSCESVVTSG QHHLQQNQPV LHPLQRDANN PAGLLAIAEE TLTEFMSKAT 120 GTAVNWVQMV GMKPGPDSTG IIAVSHNCSG VAARACGLVS LEPAKVAEIL KDRASWYRDC 180 RRVDILHVIP TGNGGTIELI YMQTYAPTTL AEPRDFWTIR YTSGLDDGSL VICERSLTKS 240 TGGPCGPNSP NFTRAELFPS GYLIRPCEGG GSMIYIVDHV DLNARSVPEV LRPLYKSPKI 300 LAQKMTVAAM RHIRQIALES SVEIPYSAGR QPAVLRTICQ RLSRGFNDAV SGFSDDGWSL 360 LSSEGSEDIT ISVKSCPSKL DGFCVSTSPF FSAIGGGIMC AKASMLIQNV PPALLVRFLR 420 EHRSQWADPG VDAYSASSLR TSQYTIPGLR GGGFIGGQAT VPLAETIDHE ESLEIVKLEG 480 NGFGHDDVLP RDMLLLQLCS GVDESAPGAC AQLVFAPIDG SFTDDAPLLP SGFRVIPLDG 540 KADAPSATHT LDLASSLEVG SGGALHVSKG TPSVGNVRSV LTIAFQFSFE NHLRESVAAM 600 ARQYIRAVMA SVQRVAMAIS PSRIGLQMEM KHPPGSPEAQ TLARWISRSY RVHTGTEIRW 660 SDNKGTESPL ELLWKHSDAA SPMLMFANSA GLDILETTLI NIQDMPLEAV LGDKGQKALF 720 LELPNIMNKG FASLPRGVCK SSMGRQASYE QAVVWKVLGD DGAPHCLALM LVNWTFI

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence Send to blast

TEHCLLDAGR CREKQRKESS RLQTVNRKLS AMNKLLMEEN DRLQKQVSRL VDDNGCMRNQ  60
LHKASAAITD TSCESVVTSG QHHLQQNQPV LHPLQRDANN PAGLLAIAEE TLTEFMSKAT  120
GTAVNWVQMV GMKPGPDSTG IIAVSHNCSG VAARACGLVS LEPAKVAEIL KDRASWYRDC  180
RRVDILHVIP TGNGGTIELI YMQTYAPTTL AEPRDFWTIR YTSGLDDGSL VICERSLTKS  240
TGGPCGPNSP NFTRAELFPS GYLIRPCEGG GSMIYIVDHV DLNARSVPEV LRPLYKSPKI  300
LAQKMTVAAM RHIRQIALES SVEIPYSAGR QPAVLRTICQ RLSRGFNDAV SGFSDDGWSL  360
LSSEGSEDIT ISVKSCPSKL DGFCVSTSPF FSAIGGGIMC AKASMLIQNV PPALLVRFLR  420
EHRSQWADPG VDAYSASSLR TSQYTIPGLR GGGFIGGQAT VPLAETIDHE ESLEIVKLEG  480
NGFGHDDVLP RDMLLLQLCS GVDESAPGAC AQLVFAPIDG SFTDDAPLLP SGFRVIPLDG  540
KADAPSATHT LDLASSLEVG SGGALHVSKG TPSVGNVRSV LTIAFQFSFE NHLRESVAAM  600
ARQYIRAVMA SVQRVAMAIS PSRIGLQMEM KHPPGSPEAQ TLARWISRSY RVHTGTEIRW  660
SDNKGTESPL ELLWKHSDAA SPMLMFANSA GLDILETTLI NIQDMPLEAV LGDKGQKALF  720
LELPNIMNKG FASLPRGVCK SSMGRQASYE QAVVWKVLGD DGAPHCLALM LVNWTFI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443548.1	0.0	homeobox-leucine zipper protein HOX33
Swissprot	A2ZMN9	0.0	HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
Swissprot	Q2QM96	0.0	HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBL	C5YRY3	0.0	C5YRY3_SORBI; Uncharacterized protein
STRING	Sb08g021350.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP374	38	197

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Luan W, et al. Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice. Sci China Life Sci, 2013. 56(12): p. 1113-23 [PMID:24302292]