PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02935.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 472aa    MW: 53690.3 Da    PI: 5.9008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02935.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.7e-1446101156
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                                   l++lL++cA+av+++d +la+ lL ++++++s dgd +qRla++++e+L+arla+ 
  Zmw_sc02935.1.g00130.1.am.mk  46 LRSLLIHCAQAVAADDRQLASDLLRKIRQHSSADGDCTQRLAFCLLEGLEARLAGI 101
                                   689**************************************************985 PP
2GRAS25.41.6e-08101154121173
                          GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                                    G +Wp+L+q +a+  + + +lRiTg++ p++g    e  ee+g+rLa++A+e++
  Zmw_sc02935.1.g00130.1.am.mk 101 IGSKWPSLIQRFAEL-GVQSKLRITGIDVPRPGfdTLEGNEEVGKRLADYANEFK 154
                                   5999*********95.7779************99889999***********9975 PP
3GRAS220.11.1e-67225470130374
                          GRAS 130 qaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
                                   + LasR++gpp+lRiTg++ pe+g    +++eetg+rLa++Ae ++vpf+++  +++ +e++++e+++++++E+l++n+ +
  Zmw_sc02935.1.g00130.1.am.mk 225 EHLASREGGPPKLRITGIDVPETGfhPCKTIEETGKRLAEYAELFNVPFDYHG-ISSLWENIRIEDINIDKDEVLIINCLH 304
                                   68********************999999*************************.799************************ PP

                          GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                                   ++++l de+ +++s+rd+vL  vk+++P+v+++   +  ++s+ Fl rf e l y+s+lfd+l+++++r +e+ri +Er l
  Zmw_sc02935.1.g00130.1.am.mk 305 KMKNLGDETEDMDSARDRVLCNVKKMNPEVLIIGVVNGAYSSPFFLSRFREVLFYFSSLFDMLNTTVARSHEARILIERYL 385
                                   ********************************************************************************* PP

                          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                                   lg ++ nvvacegaer+er et+++Wr+r  +aGFk++p+++ + k       k + + + ++e+ ++l++gWk+r + ++
  Zmw_sc02935.1.g00130.1.am.mk 386 LGAAVLNVVACEGAERIERPETYKQWRRRSLKAGFKQLPVNQAILKRSTEETGKSYHEDFIIDEDGDWLLQGWKGRIMHAL 466
                                   **********************************************9999999999888********************** PP

                          GRAS 371 SaWr 374
                                   S+W+
  Zmw_sc02935.1.g00130.1.am.mk 467 SSWK 470
                                   ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.32520450IPR005202Transcription factor GRAS
PfamPF035141.3E-1146101IPR005202Transcription factor GRAS
PfamPF035144.0E-65225470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MLMEDVDERV GLHQGEDVLQ AAEKPFYDIL AQLKGKKQLE KEVVDLRSLL IHCAQAVAAD  60
DRQLASDLLR KIRQHSSADG DCTQRLAFCL LEGLEARLAG IGSKWPSLIQ RFAELGVQSK  120
LRITGIDVPR PGFDTLEGNE EVGKRLADYA NEFKKDRACR SQEVAAMEVR WWQRLERERE  180
RESCKGNSTP CPTGVEEAKK LVPSIEKLGI DLESNELFAS MRTAEHLASR EGGPPKLRIT  240
GIDVPETGFH PCKTIEETGK RLAEYAELFN VPFDYHGISS LWENIRIEDI NIDKDEVLII  300
NCLHKMKNLG DETEDMDSAR DRVLCNVKKM NPEVLIIGVV NGAYSSPFFL SRFREVLFYF  360
SSLFDMLNTT VARSHEARIL IERYLLGAAV LNVVACEGAE RIERPETYKQ WRRRSLKAGF  420
KQLPVNQAIL KRSTEETGKS YHEDFIIDED GDWLLQGWKG RIMHALSSWK PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-24227472150381Protein SCARECROW
5b3h_A6e-24227472149380Protein SCARECROW
5b3h_D6e-24227472149380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440450.21e-137scarecrow-like protein 9
SwissprotO809338e-92SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1B6P5S11e-135A0A1B6P5S1_SORBI; Uncharacterized protein
STRINGPavir.Ca00616.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118