PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02933.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 524aa MW: 55356.8 Da PI: 10.2227

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02933.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.6e-18	273	329	1	48
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +++++G+g tW++Ia++++ Rt++++k++w+++l Zmw_sc02933.1.g00040.1.am.mkhc 273 KGPWTPEEDLVLVSYIQEHGPGnwravptrtgTWAAIASYLP-ERTDNDIKNYWNTHL 329 79**************************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.44E-15	261	334	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-23	264	336	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.634	268	333	IPR017930	Myb domain
SMART	SM00717	1.1E-15	272	331	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-16	273	329	IPR001005	SANT/Myb domain
CDD	cd00167	2.56E-13	275	329	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MSMAHPIKTS WTRRGDDLVL LMDSRHACTQ PYQVISPQTD HRQGRACGSA AHGSLARGRL 60 IRLLPRIGSG LARATLIDTR CTGKATFNTA PGERDDASKK SLPACSSSAT ASRRLRPSSQ 120 KPGREEKREM RTAPRRHGGD LDHARSAKGM ERKPGASQRA CAAAARSRAI AINAIDAASS 180 HGTAARRGPA AQRTAAALHR CVPTTRLTSA FGPSSNAIAV AHAGPTKVSA AVWQRPQAGT 240 PPAAHTPHPA KQDQIHQTTM VRPPCCDKEG VKKGPWTPEE DLVLVSYIQE HGPGNWRAVP 300 TRTGTWAAIA SYLPERTDND IKNYWNTHLK RKLQSGGGDA AAKPPAHRSP SSSKGQWERR 360 LQTDINMARR ALREALTPLD DAKPAQPDAE GAVTGGGGVV ESPASSSSGA SQCSPSAASG 420 PYVLTTENIS RMLDSWSAGG KGRRGGSGPG TPGGAESASD ASEVSYGGAG APATGPLFEY 480 EAKPAVPAQQ TQLSAIESWL FEDDSNFHHV QSSSLLDVTM DYPF

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MSMAHPIKTS WTRRGDDLVL LMDSRHACTQ PYQVISPQTD HRQGRACGSA AHGSLARGRL  60
IRLLPRIGSG LARATLIDTR CTGKATFNTA PGERDDASKK SLPACSSSAT ASRRLRPSSQ  120
KPGREEKREM RTAPRRHGGD LDHARSAKGM ERKPGASQRA CAAAARSRAI AINAIDAASS  180
HGTAARRGPA AQRTAAALHR CVPTTRLTSA FGPSSNAIAV AHAGPTKVSA AVWQRPQAGT  240
PPAAHTPHPA KQDQIHQTTM VRPPCCDKEG VKKGPWTPEE DLVLVSYIQE HGPGNWRAVP  300
TRTGTWAAIA SYLPERTDND IKNYWNTHLK RKLQSGGGDA AAKPPAHRSP SSSKGQWERR  360
LQTDINMARR ALREALTPLD DAKPAQPDAE GAVTGGGGVV ESPASSSSGA SQCSPSAASG  420
PYVLTTENIS RMLDSWSAGG KGRRGGSGPG TPGGAESASD ASEVSYGGAG APATGPLFEY  480
EAKPAVPAQQ TQLSAIESWL FEDDSNFHHV QSSSLLDVTM DYPF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958408.1	1e-122	transcription factor MYB30
TrEMBL	A0A3L6TG02	1e-121	A0A3L6TG02_PANMI; Transcription factor MYB30-like
TrEMBL	K3ZVC9	1e-121	K3ZVC9_SETIT; Uncharacterized protein
STRING	Si030560m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296