PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02926.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 483aa    MW: 50691 Da    PI: 7.8483
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02926.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.6e-1179135155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     k+++ + g ++ +++Aa+a++ a++k++g
  Zmw_sc02926.1.g00130.1.sm.mk  79 SIYRGVTRHRWTGRYEAHLWDnSCR-RegKTRKGRQGGYDKEDKAARAYDLAALKYWG 135
                                   57*******************4444.24666444557799999*************98 PP
2AP236.41.3e-11167212755
                           AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zmw_sc02926.1.g00130.1.sm.mk 167 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 212
                                   899*********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1579145IPR016177DNA-binding domain
PfamPF008471.2E-879135IPR001471AP2/ERF domain
CDDcd000182.08E-1679145No hitNo description
Gene3DG3DSA:3.30.730.107.5E-1280144IPR001471AP2/ERF domain
SMARTSM003804.1E-2280149IPR001471AP2/ERF domain
PROSITE profilePS5103217.25380143IPR001471AP2/ERF domain
PRINTSPR003671.9E-68192IPR001471AP2/ERF domain
PROSITE profilePS5103216.502159220IPR001471AP2/ERF domain
PfamPF008471.1E-6167212IPR001471AP2/ERF domain
SMARTSM003802.4E-26167226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-15168221IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15168222IPR016177DNA-binding domain
CDDcd000181.40E-18168222No hitNo description
PRINTSPR003671.9E-6202222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAGPQGSGMP VAGERGRAPE SVSTSVHGGA MVVRKEDSSG GSGGAGALVA VNTPDTGGSG  60
ASAETVATKT ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGKTRK GRQGGYDKED  120
KAARAYDLAA LKYWGPTTTT NFPVSNYEKE LEDMKHMTRQ EFVASLRRHH QHGRWQARIG  180
RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSALPIGGA  240
AKRLKEAEAA AAAAGVVGYD VGRIATQLGD SAALAAYGAH YHAAAWPTIA FQPAHAGAGA  300
ATLYHPYAQP LRGWCKQEPD RTVIAAAHSL QELHHLNLGA GAHDFFSMSG RAATHGLGSV  360
DNASLEHSTG SNSVVYSGVG DSSGGGGYMM PVNAAPTATT TAMASHEQVQ GGRTQGDQND  420
AKQPQMAYEN YLVNAEAYGC GGRTPSWSTP ASAQPVAAAT SSNDMAGVGH GGAQILSVWN  480
TLT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682077.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A368REM70.0A0A368REM7_SETIT; Uncharacterized protein
STRINGSb03g042810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110