PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc02923.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 436aa MW: 47204 Da PI: 9.6033 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.6 | 1.1e-34 | 78 | 201 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec... 73 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+ +ak+ai+e+++ a+++ Zmw_sc02923.1.g00010.1.am.mk 78 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIHNAKAAIDEIPDRpeateA---AKAAaea 155 689**************************************************************553331...2111211 PP TCP 74 .eaesssssasnsssg.................................k 89 e+++++ s+s + Zmw_sc02923.1.g00010.1.am.mk 156 tEQGEQVTSTS----YgfgsnpggavtgvaggslvqhsagadgvkslfpS 201 23333333333....13444555566666666666543333333333322 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.7E-32 | 80 | 191 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.678 | 81 | 139 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 436 aa Download sequence Send to blast |
SNNPTATTST LHYLLQEKER EQLQIYHQQG FSSYLQHHRR QQQQSRGGSG GDGISSGEST 60 PVDALTAAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR 120 PSKAVDWLIH NAKAAIDEIP DRPEATEAAK AAAEATEQGE QVTSTSYGFG SNPGGAVTGV 180 AGGSLVQHSA GADGVKSLFP SSSTASTTPT HDEQYRCSPP DLLSRTTTSS QPQELCLTLQ 240 SNQHPIFSHV SSNHHGIISG AGVPGWPEHN QRMPSWHASE NNMGDGHGGG NGETYMFSMQ 300 PRQGLDQIQW QLDFCPYLAR PPSRNTTAVG NGWAAPPLNN FARAEPPCSM RRGPAALPPD 360 YSPHHYRLAL SLRRRIKHRS RVDIKFQNSD RETRGTPRGR AMHTYVGSKQ NSPLCRAPGA 420 GADGGETHAA GSTARP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 86 | 140 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 86 | 140 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972181.1 | 1e-161 | transcription factor PCF7 | ||||
Swissprot | Q8LT05 | 1e-122 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | A0A368RB94 | 1e-159 | A0A368RB94_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb03208.1.p | 1e-153 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |