PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02923.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 436aa MW: 47204 Da PI: 9.6033

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02923.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.6	1.1e-34	78	201	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec... 73 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+ +ak+ai+e+++ a+++ Zmw_sc02923.1.g00010.1.am.mk 78 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIHNAKAAIDEIPDRpeateA---AKAAaea 155 689**************************************************************553331...2111211 PP TCP 74 .eaesssssasnsssg.................................k 89 e+++++ s+s + Zmw_sc02923.1.g00010.1.am.mk 156 tEQGEQVTSTS----YgfgsnpggavtgvaggslvqhsagadgvkslfpS 201 23333333333....13444555566666666666543333333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.7E-32	80	191	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.678	81	139	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
SNNPTATTST LHYLLQEKER EQLQIYHQQG FSSYLQHHRR QQQQSRGGSG GDGISSGEST 60 PVDALTAAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR 120 PSKAVDWLIH NAKAAIDEIP DRPEATEAAK AAAEATEQGE QVTSTSYGFG SNPGGAVTGV 180 AGGSLVQHSA GADGVKSLFP SSSTASTTPT HDEQYRCSPP DLLSRTTTSS QPQELCLTLQ 240 SNQHPIFSHV SSNHHGIISG AGVPGWPEHN QRMPSWHASE NNMGDGHGGG NGETYMFSMQ 300 PRQGLDQIQW QLDFCPYLAR PPSRNTTAVG NGWAAPPLNN FARAEPPCSM RRGPAALPPD 360 YSPHHYRLAL SLRRRIKHRS RVDIKFQNSD RETRGTPRGR AMHTYVGSKQ NSPLCRAPGA 420 GADGGETHAA GSTARP

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

SNNPTATTST LHYLLQEKER EQLQIYHQQG FSSYLQHHRR QQQQSRGGSG GDGISSGEST  60
PVDALTAAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR  120
PSKAVDWLIH NAKAAIDEIP DRPEATEAAK AAAEATEQGE QVTSTSYGFG SNPGGAVTGV  180
AGGSLVQHSA GADGVKSLFP SSSTASTTPT HDEQYRCSPP DLLSRTTTSS QPQELCLTLQ  240
SNQHPIFSHV SSNHHGIISG AGVPGWPEHN QRMPSWHASE NNMGDGHGGG NGETYMFSMQ  300
PRQGLDQIQW QLDFCPYLAR PPSRNTTAVG NGWAAPPLNN FARAEPPCSM RRGPAALPPD  360
YSPHHYRLAL SLRRRIKHRS RVDIKFQNSD RETRGTPRGR AMHTYVGSKQ NSPLCRAPGA  420
GADGGETHAA GSTARP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-19	86	140	1	55	Putative transcription factor PCF6
5zkt_B	2e-19	86	140	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972181.1	1e-161	transcription factor PCF7
Swissprot	Q8LT05	1e-122	PCF7_ORYSJ; Transcription factor PCF7
TrEMBL	A0A368RB94	1e-159	A0A368RB94_SETIT; Uncharacterized protein
STRING	Pavir.Eb03208.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12056	23	30