PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02918.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 249aa MW: 27234.7 Da PI: 9.455

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02918.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.7e-18	137	191	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+ q Le+ F+ ++ +s++++ +LA+++gL+ rqV vWFqNrRa+ k Zmw_sc02918.1.g00160.1.am.mk 137 RKKLRLTSAQASLLEDSFRAHNILSHTQKHDLARRVGLSARQVEVWFQNRRARTK 191 788899***********************************************98 PP
2	HD-ZIP_I/II	114.5	6.5e-37	137	226	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl++ q++lLE+sF++++ L++++K++lar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+ Zmw_sc02918.1.g00160.1.am.mk 137 RKKLRLTSAQASLLEDSFRAHNILSHTQKHDLARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDSLTDENARLR 217 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLree 90 ++ +eLr++ Zmw_sc02918.1.g00160.1.am.mk 218 RDLAELRAA 226 ****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.779	133	193	IPR001356	Homeobox domain
SMART	SM00389	7.3E-13	135	197	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.09E-17	135	202	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-17	137	196	IPR009057	Homeodomain-like
Pfam	PF00046	2.0E-15	137	191	IPR001356	Homeobox domain
CDD	cd00086	1.44E-12	137	194	No hit	No description
PRINTS	PR00031	2.3E-5	164	173	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	168	191	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.3E-5	173	189	IPR000047	Helix-turn-helix motif
SMART	SM00340	1.1E-15	193	236	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	9.1E-9	193	225	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MPAFPSTLLL IETSQPAPAH PVHQQSTSLT TAGSSMEDCS AEYDTRLTLE TSRPLPPQGQ 60 ATVRLFGELI SPQDYGRGRA DRLEPTAPAA GRKKRADCGG VETATGGAGG RQNKRAIRTL 120 QVEDDGDRRS QSDGGSRKKL RLTSAQASLL EDSFRAHNIL SHTQKHDLAR RVGLSARQVE 180 VWFQNRRART KLKQTEVDCE LLRRWCDSLT DENARLRRDL AELRAAAAVS VVCPSCCNKK 240 MAVVAGDMA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	SRKKLRL
2	185	193	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797072.1	5e-70	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	9e-48	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	A0A1E5UWC5	2e-73	A0A1E5UWC5_9POAL; Putative homeobox-leucine zipper protein HOX26
STRING	Pavir.J13660.1.p	7e-72	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49