PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02908.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 1095aa MW: 117913 Da PI: 9.6441

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02908.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	169.4	4.3e-53	32	127	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdr++Pianv+rim++vlPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvep Zmw_sc02908.1.g00160.1.am.mk 32 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEP 112 89***************************************************************************** PP NF-YB 83 lkvylkkyrelegek 97 l+vyl++yre+ege Zmw_sc02908.1.g00160.1.am.mk 113 LSVYLHRYREFEGEA 127 **********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-48	25	133	IPR009072	Histone-fold
SuperFamily	SSF47113	3.69E-37	34	142	IPR009072	Histone-fold
Pfam	PF00808	3.3E-24	38	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.4E-15	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.4E-15	84	102	No hit	No description
PRINTS	PR00615	3.4E-15	103	121	No hit	No description
SuperFamily	SSF49503	5.1E-30	614	716	IPR008972	Cupredoxin
Gene3D	G3DSA:2.60.40.420	5.8E-33	614	720	IPR008972	Cupredoxin
PROSITE profile	PS51485	39.433	615	717	IPR003245	Phytocyanin domain
CDD	cd11019	2.01E-53	615	716	No hit	No description
Pfam	PF02298	4.3E-22	625	709	IPR003245	Phytocyanin domain
ProDom	PD003122	2.0E-16	653	717	IPR003245	Phytocyanin domain
Pfam	PF05627	2.2E-20	855	890	IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009055	Molecular Function	electron carrier activity
GO:0033613	Molecular Function	activating transcription factor binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1095 aa Download sequence Send to blast
MDSIFPDGAT ANGGNNGGGG GAQAQQAAPA IREQDRLMPI ANVIRIMRRV LPAHAKISDD 60 AKETIQECVS EYISFITGEA NERCQREQRK TITAEDVLWA MSRLGFDDYV EPLSVYLHRY 120 REFEGEARGV VGAARGGGGG VDHHHHHQMF NSRAPATAHH HDMQVHPAMY GGAAVPPHHG 180 FAAPPPHQGQ YMPIPYPYDT YGGEHAMAAY YGAAAYGPGN GGDGSGGSAS HTSQAGGTSS 240 LEHQHPFASK ERKTSPILKA DAAKYSNQDI YERAREDVAS CNSTVAREPA AGLAAEAAGR 300 RALTGAGKHA APIGPDYITG LRFVSPAPVH ALLAVASGTA DRSAPSYHLL DSHLGWQRLL 360 WNIRRWLLSI SRSSTLPLLS YYVNPFIVHY FLSIHTIVVI CVLIKCKEGW FHLLREAVDL 420 VGPHKVGEFE VEPTFCPAPS AASRSRSARA PRSSGRRPAR SRLASRVTPH RPPFRRVPPS 480 QAAAAAGAEP LVKRQSRAVQ QTLEGADQRL VEKQRLFSES PTARPLRTSA THSALDHRRH 540 PFGSQPCRLY KPLPSRRQLA TIHTPTSRVE RSCVRSFESN HRSIFASMAA TTLRFAVFAA 600 SCALLAASVS SLPAAVFSVG DEKGWTVPLG NGTESYNHWA KRNRFQVGDV LEFKYVNDSV 660 LVVNHDEYKQ CSTEAPLNRF TDGDTKFTFD RSGLFYFVSG VPGHCEAGQR MIARVMAPSS 720 LTITPAAAPG MPPTAPVVAP TQASPNAGSP PSGPSSSGAA SSTTPTPTPT AQPSGADRVF 780 ASVVLGLVEV AFLAVYLEAA AASESSPFPS RPRERVLPLA RRHQQASKGK IFLGPLKKPA 840 SDVAGQPGLC RWQDANGRTL PKFGEWDVNN PASADGFTVI FSKARDEKKA PPAKGHISNR 900 SADRKGSRTE KMSSYNSTRT SASATLELFD PGTRQRHEHY VWPCILSNQF QFLPSPLSSF 960 PHAPTRRLLL PLRLLMADAS LSSSTAGDAP PAAPVPAADA PDAGVAAETP DPDVEFGFQR 1020 PEMGKEKLAG TVQFYERHVI LCYKGPEAWA SHVEAALPDR IPGLLAAAIK ANKPNLKKPV 1080 STDLSPLTIA SLFRL

Sequence ? help Back to Top

Protein Sequence Length: 1095 aa Download sequence Send to blast

MDSIFPDGAT ANGGNNGGGG GAQAQQAAPA IREQDRLMPI ANVIRIMRRV LPAHAKISDD  60
AKETIQECVS EYISFITGEA NERCQREQRK TITAEDVLWA MSRLGFDDYV EPLSVYLHRY  120
REFEGEARGV VGAARGGGGG VDHHHHHQMF NSRAPATAHH HDMQVHPAMY GGAAVPPHHG  180
FAAPPPHQGQ YMPIPYPYDT YGGEHAMAAY YGAAAYGPGN GGDGSGGSAS HTSQAGGTSS  240
LEHQHPFASK ERKTSPILKA DAAKYSNQDI YERAREDVAS CNSTVAREPA AGLAAEAAGR  300
RALTGAGKHA APIGPDYITG LRFVSPAPVH ALLAVASGTA DRSAPSYHLL DSHLGWQRLL  360
WNIRRWLLSI SRSSTLPLLS YYVNPFIVHY FLSIHTIVVI CVLIKCKEGW FHLLREAVDL  420
VGPHKVGEFE VEPTFCPAPS AASRSRSARA PRSSGRRPAR SRLASRVTPH RPPFRRVPPS  480
QAAAAAGAEP LVKRQSRAVQ QTLEGADQRL VEKQRLFSES PTARPLRTSA THSALDHRRH  540
PFGSQPCRLY KPLPSRRQLA TIHTPTSRVE RSCVRSFESN HRSIFASMAA TTLRFAVFAA  600
SCALLAASVS SLPAAVFSVG DEKGWTVPLG NGTESYNHWA KRNRFQVGDV LEFKYVNDSV  660
LVVNHDEYKQ CSTEAPLNRF TDGDTKFTFD RSGLFYFVSG VPGHCEAGQR MIARVMAPSS  720
LTITPAAAPG MPPTAPVVAP TQASPNAGSP PSGPSSSGAA SSTTPTPTPT AQPSGADRVF  780
ASVVLGLVEV AFLAVYLEAA AASESSPFPS RPRERVLPLA RRHQQASKGK IFLGPLKKPA  840
SDVAGQPGLC RWQDANGRTL PKFGEWDVNN PASADGFTVI FSKARDEKKA PPAKGHISNR  900
SADRKGSRTE KMSSYNSTRT SASATLELFD PGTRQRHEHY VWPCILSNQF QFLPSPLSSF  960
PHAPTRRLLL PLRLLMADAS LSSSTAGDAP PAAPVPAADA PDAGVAAETP DPDVEFGFQR  1020
PEMGKEKLAG TVQFYERHVI LCYKGPEAWA SHVEAALPDR IPGLLAAAIK ANKPNLKKPV  1080
STDLSPLTIA SLFRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-56	31	122	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331