PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02896.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 431aa    MW: 46589.2 Da    PI: 6.9553
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02896.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.62e-82284192374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                    + Ll+ + a ++gd+++a a+L+ +  +as +g  p qR+aayf+ ALa+rl+r      + +++s+    + +e++ a+
  Zmw_sc02896.1.g00150.1.sm.mk  28 MHRLLSSVAAGEAGDAQAAAAALQVVYRRASFRGgYPAQRVAAYFADALASRLLR------SPVAASPR--ATRTEQFLAY 100
                                   6889999999*********************99978*******************......33333333..35789999** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.....eg........ppslRiTgv 147
                                   ++f+++sP+++++h+taNqaI+ea+e    +r+H+iDfd+ +G+QWp+L+q+L++ +     ++        + slRiTg+
  Zmw_sc02896.1.g00150.1.sm.mk 101 TMFYQTSPLYQLAHFTANQAIVEAFEAGgrRRLHVIDFDVLYGFQWPSLIQSLSDAAatstsSSsdgdgdepAVSLRITGF 181
                                   *************************9766699*********************987755555005556665355******* PP

                          GRAS 148 gspesgskeeleetgerLakfAeel.gvpfefnvlvakrledl...eleeLrvkpgEalaVnlvlqlhrlldesvsleser 224
                                   g     s++el++t+ rL++fA+ + +++fef+ + ++ l++    +    +++ + +++Vnlv+  +r       ++s+ 
  Zmw_sc02896.1.g00150.1.sm.mk 182 GT----SADELRQTEARLTRFASGCaNLRFEFEGI-VDGLTSRgrrHDAVVKIEDDATVVVNLVFPDERDT----GTSSRE 253
                                   **....9***************97549*******6.55444442112233566779999*****9555443....344446 PP

                          GRAS 225 devLklvkslsPkvvvvveqeadhnse........sFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                                    ++L  v+sl+P  v +ve+   ++s+         +l rf+ +l+y++a+fdsl++ lp++s er  +E+  lg ei+n+
  Zmw_sc02896.1.g00150.1.sm.mk 254 CSTLARVRSLNPFFVFLVEKHDGTGSSatsrgptsLLLPRFTACLRYFAAVFDSLHQCLPADSAERLAIEKNHLGSEISNA 334
                                   79*****************997776555777888789******************************************** PP

                          GRAS 298 vacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.....yrve.eesgslv.lgWkdrpLvsv 370
                                   +a   ++ +  +h+  ++W+ ++e+aGF+ v+ls++a++qaklll++ ++ g     +rv   +sg ++ lgW+d +L+++
  Zmw_sc02896.1.g00150.1.sm.mk 335 IASLDDHhHGDDHTAGATWKVMMEDAGFEGVKLSSRAVSQAKLLLKMKSGCGagsggFRVVdGDSGKAMsLGWRDSALITA 415
                                   **988874678899999****************************9976332234459988545666666*********** PP

                          GRAS 371 SaWr 374
                                   +aWr
  Zmw_sc02896.1.g00150.1.sm.mk 416 TAWR 419
                                   ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.9831392IPR005202Transcription factor GRAS
PfamPF035147.1E-8028419IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MARLEQDDET WMMVSDDGTG GGGGIRLMHR LLSSVAAGEA GDAQAAAAAL QVVYRRASFR  60
GGYPAQRVAA YFADALASRL LRSPVAASPR ATRTEQFLAY TMFYQTSPLY QLAHFTANQA  120
IVEAFEAGGR RRLHVIDFDV LYGFQWPSLI QSLSDAAATS TSSSSDGDGD EPAVSLRITG  180
FGTSADELRQ TEARLTRFAS GCANLRFEFE GIVDGLTSRG RRHDAVVKIE DDATVVVNLV  240
FPDERDTGTS SRECSTLARV RSLNPFFVFL VEKHDGTGSS ATSRGPTSLL LPRFTACLRY  300
FAAVFDSLHQ CLPADSAERL AIEKNHLGSE ISNAIASLDD HHHGDDHTAG ATWKVMMEDA  360
GFEGVKLSSR AVSQAKLLLK MKSGCGAGSG GFRVVDGDSG KAMSLGWRDS ALITATAWRR  420
RRSSVIHRLN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-446242153381Protein SCARECROW
5b3h_A3e-446242152380Protein SCARECROW
5b3h_D3e-446242152380Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975641.10.0DELLA protein DWARF8
TrEMBLK3Y6Y10.0K3Y6Y1_SETIT; Uncharacterized protein
STRINGSi009972m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038