PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02891.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 26908.9 Da PI: 5.7841 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.6e-20 | 32 | 86 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +ft+eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Zmw_sc02891.1.g00040.1.sm.mkhc 32 RNKKRFTEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 86 67789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122 | 2.9e-39 | 33 | 124 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 +k+r+++eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L Zmw_sc02891.1.g00040.1.sm.mkhc 33 NKKRFTEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESL 111 79***************************************************************************** PP HD-ZIP_I/II 81 ekeveeLreelke 93 +ke+++L ++l++ Zmw_sc02891.1.g00040.1.sm.mkhc 112 KKEKHALLKQLEK 124 ********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-20 | 16 | 89 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-19 | 21 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-16 | 31 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.06E-16 | 32 | 89 | No hit | No description |
Pfam | PF00046 | 2.7E-17 | 32 | 86 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 7.9E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.9E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.5E-13 | 88 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEGDEDVPEW MMDPGGAGGG KGGKGGGGAV DRNKKRFTEE QIKSLESMFA TQTKLEPRQK 60 LQLARELGLQ PRQVAIWFQN KRARWKSKQL EREYSALRDD YDALLCSYES LKKEKHALLK 120 QLEKLAEMLQ EPAPKYSNNA DAGPRDDSRK GVTTGMKEEF SDVRPAPYAS SLKEGGGKLA 180 QHFADDDAGT FFRAPSPQPS AGFTASGPPE HQPFQFHSSC WPSSAEQSCG SSQWWEFESL 240 SE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | GGKGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001183573.1 | 1e-121 | uncharacterized protein LOC100502166 | ||||
Swissprot | Q651Z5 | 1e-88 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 1e-88 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | A0A0A9CR23 | 1e-124 | A0A0A9CR23_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G041462_P01 | 1e-120 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 |
Publications ? help Back to Top | |||
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