PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02884.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 376aa MW: 42334.9 Da PI: 6.1141

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02884.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.4	5.5e-12	62	93	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 + +k err+++NReAAr+sR+RKka++++Le+ Zmw_sc02884.1.g00120.1.sm.mkhc 62 EHDKTERRLAQNREAARKSRLRKKAYVQQLET 93 578***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-8	57	107	No hit	No description
SMART	SM00338	8.8E-8	61	127	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.4E-9	63	95	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.071	63	107	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.87E-7	65	108	No hit	No description
PROSITE pattern	PS00036	0	68	83	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.0E-28	145	220	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MSQMELVSPA SSALRQEVMM VTTDDYSYSY RPGLAAAAPP PPASAAAPSF QQQPMQQLHG 60 GEHDKTERRL AQNREAARKS RLRKKAYVQQ LETSRIRLQQ VEHELQRARS QGLLVGGCSA 120 AGDMSSGAAM FELEYARWLD DDSKQLEELR GGLLAQLLDG NLGLIVEECM QHYDELFQLK 180 AELARSDVFH LLTGIWATPA ERCFFWMGGF RPSELLKILM QQLDPMTEQQ MMGICNLQQS 240 SEQAEEALAQ GLHQLHQSLA DTVAAGTLND GVVTPNYMNL MAVALEKLAS LESFYKQADN 300 LRQQTLHQMR RILTTRQAAR CFLSIGEYYR RLRALSNLWA SRPRENFNGT ESNSPTATEL 360 QAMLQQQQQQ NQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MSQMELVSPA SSALRQEVMM VTTDDYSYSY RPGLAAAAPP PPASAAAPSF QQQPMQQLHG  60
GEHDKTERRL AQNREAARKS RLRKKAYVQQ LETSRIRLQQ VEHELQRARS QGLLVGGCSA  120
AGDMSSGAAM FELEYARWLD DDSKQLEELR GGLLAQLLDG NLGLIVEECM QHYDELFQLK  180
AELARSDVFH LLTGIWATPA ERCFFWMGGF RPSELLKILM QQLDPMTEQQ MMGICNLQQS  240
SEQAEEALAQ GLHQLHQSLA DTVAAGTLND GVVTPNYMNL MAVALEKLAS LESFYKQADN  300
LRQQTLHQMR RILTTRQAAR CFLSIGEYYR RLRALSNLWA SRPRENFNGT ESNSPTATEL  360
QAMLQQQQQQ NQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818709.1	0.0	transcription factor LG2 isoform X2
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A2T8IJA6	0.0	A0A2T8IJA6_9POAL; Uncharacterized protein
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]