PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02883.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 729aa MW: 79830.2 Da PI: 9.9104

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02883.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.6	3.4e-51	191	318	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+ +yL++++ + ++++ +i++vdiyk++Pw Lp++++ ++kewyfFs+rd+ky++g r+nra+ sg Zmw_sc02883.1.g00030.1.am.mk 191 LPPGFRFHPTDEELILHYLRNRAGSLPCPE-AIIADVDIYKFDPWALPSMAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSG 270 79***********************999.88***********8777899********************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+++s+ + e+vg+kk Lvfy gr pkg+kt+W+mheyrl Zmw_sc02883.1.g00030.1.am.mk 271 YWKATGTDKAIHSTtTFENVGVKKALVFYMGRPPKGTKTNWIMHEYRL 318 ********9866678*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-63	183	351	IPR003441	NAC domain
PROSITE profile	PS51005	60.305	191	351	IPR003441	NAC domain
Pfam	PF02365	1.5E-26	192	318	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MLLVCLQAAA IPLSDGILSR EKKICRGRRK PWPGRSPRKA ARWKHRPPTR AGAAEFQRQP 60 SWGPPSPRIS GGITPDVREA RRNDDQTITT HAPACRCRSP APPHYRERPG AWAPREARSP 120 PVPEKNPPFP HFSELDRAEL LSPSSRGLAA RALRGEEGRS ITTSAPARSV DRSRAWERLV 180 PMVMANPATS LPPGFRFHPT DEELILHYLR NRAGSLPCPE AIIADVDIYK FDPWALPSMA 240 AYGDKEWYFF SPRDRKYPNG IRPNRAAGSG YWKATGTDKA IHSTTTFENV GVKKALVFYM 300 GRPPKGTKTN WIMHEYRLAA DANGGHAYRP MKFGNASMRL DDWVLCRIYN KTSHASPTPV 360 PSFPNHEQDE PCGFDEALYT TSSSAGMNIL QGGVAASAFP MQQAATGGTQ MMPRIQSFSE 420 LLNEYSLAQF FDDGGVQHAV PHLDQQHHAP LLGHPVASHL LVNNGNSNMS GQLLLANSTA 480 STSAAAAGDG SMVGGKRKRT EESWSHHQAA AAKKPNSSCI GATGVYAEPP WNCEEQCSSY 540 EDRYPGHIPC SVYLPVSRLG SQAGRRVRSA HAGATVVVLH GVLELVQHDA AWPPGGRSHA 600 CIRTRKQGSR SASHHQLLQE IRPNYESNQL VQQEAGREIV RTSERGEVGE AREVALAWPA 660 CIVRCRTGCQ PRPHPAAMGN VRYVPRGTDR GAASDRARAC VARVLRALPD GVPAVAYAFS 720 AVERKIQST

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MLLVCLQAAA IPLSDGILSR EKKICRGRRK PWPGRSPRKA ARWKHRPPTR AGAAEFQRQP  60
SWGPPSPRIS GGITPDVREA RRNDDQTITT HAPACRCRSP APPHYRERPG AWAPREARSP  120
PVPEKNPPFP HFSELDRAEL LSPSSRGLAA RALRGEEGRS ITTSAPARSV DRSRAWERLV  180
PMVMANPATS LPPGFRFHPT DEELILHYLR NRAGSLPCPE AIIADVDIYK FDPWALPSMA  240
AYGDKEWYFF SPRDRKYPNG IRPNRAAGSG YWKATGTDKA IHSTTTFENV GVKKALVFYM  300
GRPPKGTKTN WIMHEYRLAA DANGGHAYRP MKFGNASMRL DDWVLCRIYN KTSHASPTPV  360
PSFPNHEQDE PCGFDEALYT TSSSAGMNIL QGGVAASAFP MQQAATGGTQ MMPRIQSFSE  420
LLNEYSLAQF FDDGGVQHAV PHLDQQHHAP LLGHPVASHL LVNNGNSNMS GQLLLANSTA  480
STSAAAAGDG SMVGGKRKRT EESWSHHQAA AAKKPNSSCI GATGVYAEPP WNCEEQCSSY  540
EDRYPGHIPC SVYLPVSRLG SQAGRRVRSA HAGATVVVLH GVLELVQHDA AWPPGGRSHA  600
CIRTRKQGSR SASHHQLLQE IRPNYESNQL VQQEAGREIV RTSERGEVGE AREVALAWPA  660
CIVRCRTGCQ PRPHPAAMGN VRYVPRGTDR GAASDRARAC VARVLRALPD GVPAVAYAFS  720
AVERKIQST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-66	190	355	16	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-66	190	355	16	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-66	190	355	16	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-66	190	355	16	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-66	190	355	19	172	NAC domain-containing protein 19
3swm_B	1e-66	190	355	19	172	NAC domain-containing protein 19
3swm_C	1e-66	190	355	19	172	NAC domain-containing protein 19
3swm_D	1e-66	190	355	19	172	NAC domain-containing protein 19
3swp_A	1e-66	190	355	19	172	NAC domain-containing protein 19
3swp_B	1e-66	190	355	19	172	NAC domain-containing protein 19
3swp_C	1e-66	190	355	19	172	NAC domain-containing protein 19
3swp_D	1e-66	190	355	19	172	NAC domain-containing protein 19
4dul_A	1e-66	190	355	16	169	NAC domain-containing protein 19
4dul_B	1e-66	190	355	16	169	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123