PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02858.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 181aa MW: 20217.6 Da PI: 11.4775

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02858.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.3	1.7e-28	19	69	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWt+eLH+ Fv+av+ LGG++kAtPk il++m+v gLt++hvkSHLQ+ Zmw_sc02858.1.g00050.1.sm.mk 19 PRLRWTTELHHGFVRAVDCLGGPDKATPKLILQIMDVRGLTIAHVKSHLQR 69 8*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.475	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-27	15	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-14	17	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-20	19	69	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGGGRNGAAT RRYNRSKVPR LRWTTELHHG FVRAVDCLGG PDKATPKLIL QIMDVRGLTI 60 AHVKSHLQRC NHGKQQYIRS THSPLMREEA PKSSCAYPRK GQRQGQKLLR PRTKACCRGT 120 VIWGLLAPSA AAMIACKRCP WVGVGGGRTR ASDGRGMLLL LLPCKRWDFG CEDTRPSRYT 180 R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Aa00827.1.p	8e-34	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83