PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02857.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 284aa MW: 30589.7 Da PI: 6.2629

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02857.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.5	7e-09	131	177	4	50
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + + rr NReA r++R++ ka + Lee+vk+L a N++L +l+ Zmw_sc02857.1.g00140.1.sm.mk 131 SSKPRRPLGNREAVRKYREKGKAHAAFLEEEVKKLRATNQQLLRTLQ 177 556788899*********************************97775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.5E-14	126	196	No hit	No description
SMART	SM00338	1.2E-6	127	195	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.1E-12	130	185	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.06E-6	134	178	No hit	No description
CDD	cd14686	2.01E-8	135	185	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MLVAGLDRGI LLGIGKVLEL FAEGKKEFRL SETGYAEVMR RRAENTFGIR VIYLKQLGQI 60 WVVGWEFELH KFPVEAPVTW QSSVDQFLFG GDRAPKHICN PPSTSAAVTC LHTHSQAIAG 120 GGEDAAPREE SSKPRRPLGN REAVRKYREK GKAHAAFLEE EVKKLRATNQ QLLRTLQDHA 180 ALEAEAVRLR SLLLDVRGKI DAEVGASPFP MQCSVGSVSV VGGDASALCF NGNSEVGGAW 240 EESYTPAAAD RGSDEGGGMS REIGISEVVP SMNVAAGAEF VTPG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805852.1	1e-70	basic leucine zipper 23-like isoform X4
Swissprot	Q8GTS2	3e-33	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0A9S3G7	2e-73	A0A0A9S3G7_ARUDO; Uncharacterized protein
STRING	GRMZM2G175870_P01	3e-67	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3831	36	75

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]