PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02844.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 427aa    MW: 46258.8 Da    PI: 7.0148
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02844.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-20174233357
                                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Zmw_sc02844.1.g00080.1.am.mk 174 TRWCPTPEQLMVLEEMYRGgMRTPTASQIQQITAHLadygRIEGKNVFYWFQNHKARDRQ 233
                                   8*****************99*************************************996 PP
2Wus_type_Homeobox118.23.6e-38173234364
             Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                   +tRW+PtpeQ+++Lee+y+ G+rtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Zmw_sc02844.1.g00080.1.am.mk 173 STRWCPTPEQLMVLEEMYRGGMRTPTASQIQQITAHLADYGRIEGKNVFYWFQNHKARDRQK 234
                                   79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.0E-4171238IPR001356Homeobox domain
SuperFamilySSF466891.1E-10173237IPR009057Homeodomain-like
CDDcd000864.14E-5174234No hitNo description
PfamPF000466.9E-18174233IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-7175233IPR009057Homeodomain-like
PROSITE profilePS5007110.106179234IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MVSYSTAMAS RWSTPPPTPV VIDQINRLLR EPCEQHISVE PCQYGSSFQP CTAVICACEL  60
ADTAASCMEF TYCVSGYSGT RKHGDAIDNG CGADATNVHR PVASSLTHPH LQRLFTLRQR  120
STQAIDRRST THRVSVDGWS TYASRVYSRE EEDDFMPSQQ GGQQQQQVPT MGSTRWCPTP  180
EQLMVLEEMY RGGMRTPTAS QIQQITAHLA DYGRIEGKNV FYWFQNHKAR DRQKLRRRLC  240
MSHHRHLLTC SAQYYAATAT HHHHGHGFPA TMPVAPAYGC GGGGVFDQPA GAAGVQLLAP  300
TSSSLAATAA YGYYYPAATT FAAAPTVRCA GDGGTTPPSP NQLFNYHQDG GGVALAPAEA  360
LGRPEHSLGK LADNFGVSTT LDDGVEIGPP GFEGSLPSPL TTALCRPLKT LDLFPGGLKE  420
EQQHDVV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809937.14e-84putative WUSCHEL-related homeobox 2
SwissprotA2XZR38e-59WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX13e-91A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGPavir.J22602.1.p2e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897