PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02827.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 323aa MW: 33759.9 Da PI: 6.2986 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 228 | 250 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + ++C ++ar G+Ck G++C+F H Zmw_sc02827.1.g00130.1.sm.mk 228 GFKPCLYYAR-GFCKNGSSCRFVH 250 5689******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.563 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-5 | 228 | 250 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-5 | 229 | 250 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 230 | 250 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MDAYEATKVV FSRIQALDPD NAAKIMGLLL IQDHGDKEMI RLAFGPESLL HAVMAKARKD 60 LGLLPPASPT SVAAAGHVPF LQLPRQSSGR AGAGAPSPLS VSSPSCWAQA PPFSRSNNGS 120 NGAAEEAQAP DGEELPSPVN GGAAPFFPQG RGALLEDMQL QEQLAFLNEG GVNSTHQFPP 180 FDGGECPSPG LGDGGGLFSY GLGWPNGGPA HRRSASVNEL CLGGDGFGFK PCLYYARGFC 240 KNGSSCRFVH AGLSDDAAAL SSPRMDVADQ QQHCQDLLLR SKSQRLGPAA FPYSPTGSLP 300 GSPSAAGKCL NLLLQQQQQQ HDR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467925.1 | 1e-153 | zinc finger CCCH domain-containing protein 22 isoform X1 | ||||
Swissprot | Q10M00 | 1e-141 | C3H22_ORYSJ; Zinc finger CCCH domain-containing protein 22 | ||||
TrEMBL | A0A3L6TFW3 | 1e-162 | A0A3L6TFW3_PANMI; Zinc finger CCCH domain-containing protein 22-like | ||||
STRING | Sb01g036490.1 | 1e-152 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1433 | 11 | 15 |
Publications ? help Back to Top | |||
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