PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02779.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 699aa MW: 74099.7 Da PI: 6.687

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02779.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	38.7	1.5e-12	647	699	2	54
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarla 54 ++lL++cA+ v+++d + a lL++++++as++gd qRla++f+++L+arla Zmw_sc02779.1.g00130.1.am.mk 647 ETLLIHCAQSVATDDRRSAVDLLKQIRQHASSNGDGDQRLAHCFANGLEARLA 699 789************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.561	620	699	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.1E-10	647	699	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MIVWQRGRGP APQGRSLTCR SAAPRPNSLR RARAWRRRGW PGTTTWLPET WVKSQSGRDT 60 TLPMGPAAPH QRILGANRPY AVPHLNRPPQ PPAVTRAADC GPGARARRMP GLVSLFPLLP 120 VLMRGPDQPA PLERHWSAAS TTSAFLLSLS RVVSALSPSS PGVIRAVAGL ERHLDELGHL 180 RDSVLCAHGS LGLVSAPRRV DLDTASCCAA GVVPIVMDAG MHELCTLLPG SKRDGHLPVY 240 RQIGAAGAGA SGFMMDELEA LLFMPPDGIA SAASGGGYLN VAPSIVVPPA STNRASPPRG 300 ALAAPAAGQP DDSEAFSDIV LGYINRMLMA EDIDEKFEHY PEHGALLAAE KPFLEILADQ 360 PASSGGSAVD SPDGSSVTTN SCSSLGSCGC AAAAHDGLGA EGTSLLDFPT APFLQPPQLY 420 GDLSPDGSGV ESGDAWPTEL YQLRTNPLPE TLLSQSSSFG SSNGSGATVP DGFESLLTSP 480 GFMPVVGFTE FALQSQQAMH FSRGLEEASR FLPDESKLVI DLEKSTSVPS LPSNVKEEKK 540 FVEVKTEKPE VESAAHRGKK HFYGDDLDAE EGRCTKHSAL AIDTDHLVRE MMDKVLLCNG 600 ETCSKGVKEL REALQNEKHS HGGHGKGSGH GKGRGKKQPK KEVVDLETLL IHCAQSVATD 660 DRRSAVDLLK QIRQHASSNG DGDQRLAHCF ANGLEARLA

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MIVWQRGRGP APQGRSLTCR SAAPRPNSLR RARAWRRRGW PGTTTWLPET WVKSQSGRDT  60
TLPMGPAAPH QRILGANRPY AVPHLNRPPQ PPAVTRAADC GPGARARRMP GLVSLFPLLP  120
VLMRGPDQPA PLERHWSAAS TTSAFLLSLS RVVSALSPSS PGVIRAVAGL ERHLDELGHL  180
RDSVLCAHGS LGLVSAPRRV DLDTASCCAA GVVPIVMDAG MHELCTLLPG SKRDGHLPVY  240
RQIGAAGAGA SGFMMDELEA LLFMPPDGIA SAASGGGYLN VAPSIVVPPA STNRASPPRG  300
ALAAPAAGQP DDSEAFSDIV LGYINRMLMA EDIDEKFEHY PEHGALLAAE KPFLEILADQ  360
PASSGGSAVD SPDGSSVTTN SCSSLGSCGC AAAAHDGLGA EGTSLLDFPT APFLQPPQLY  420
GDLSPDGSGV ESGDAWPTEL YQLRTNPLPE TLLSQSSSFG SSNGSGATVP DGFESLLTSP  480
GFMPVVGFTE FALQSQQAMH FSRGLEEASR FLPDESKLVI DLEKSTSVPS LPSNVKEEKK  540
FVEVKTEKPE VESAAHRGKK HFYGDDLDAE EGRCTKHSAL AIDTDHLVRE MMDKVLLCNG  600
ETCSKGVKEL REALQNEKHS HGGHGKGSGH GKGRGKKQPK KEVVDLETLL IHCAQSVATD  660
DRRSAVDLLK QIRQHASSNG DGDQRLAHCF ANGLEARLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970541.1	0.0	scarecrow-like protein 9
TrEMBL	A0A1E5VF22	0.0	A0A1E5VF22_9POAL; Scarecrow-like protein 9
STRING	Pavir.Eb03680.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37