PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02777.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 803aa MW: 84091.2 Da PI: 8.2427 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.7 | 2.2e-34 | 452 | 547 | 1 | 83 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............sss 68 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l + + Zmw_sc02777.1.g00140.1.am.mk 452 ATGRKDRHSKVCTSRGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDKLEVLpawqptnnaaagaALP 532 589**************************************************************7766655554444222 PP TCP 69 saseceaesssssas 83 ++s++ ++s ++s++ Zmw_sc02777.1.g00140.1.am.mk 533 PSSSTHPDSAENSDD 547 223332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-30 | 453 | 527 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.126 | 455 | 513 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MRFADCLGVG DSAVGTTHGS LTEEEIGTSM QACIKPRGDR SQLQSRVCPT VLARLDSSVA 60 GAGSRSRDDQ RERGMVGFSG GGPWWLSVAE VDRSIDRGHA AIMGSVNCAA YCTRRCCRRV 120 ACPFGSSDGE GKSSSAGAGA AAAALLVCRA RHRPIAPVLR AVFLPDRIRT PGSILQSVTH 180 QPVNYMSAPT TTFFSLWRSG KRKGPGSVKL CVAASPVSST TPLSARLLLL LLLKWVCDVA 240 IHPIASGLAS PPLHSTALHS PRLGGWMRIA KVVAANQAGD LDPRHHHRVA HGGDGAGGGG 300 GGGGGEADEQ QQQHNHRLLQ FHQEEQDQEP PSAPVFQLQH LQATALSRQR ASSAEYALLA 360 SMGDAGQSHS HSHLHHGGFQ PQLLSFGGVG QQHHHHLHQF TAQAPAGASH SRSRAAGGGG 420 GGEAVPASQS SSRVRSAGGE IVAVQGGHIV RATGRKDRHS KVCTSRGPRD RRVRLSAHTA 480 IQFYDVQDRL GYDRPSKAVD WLIKNAKEAI DKLEVLPAWQ PTNNAAAGAA LPPSSSTHPD 540 SAENSDDQAQ AITVAHAGFD FPIRAEGGGA AGAGGGTAFL PSSLDSDSIA DTIKSFFPVG 600 GGTAGGEASS STAVARHSSA MRFQSYTPDL LSRTGSHSQD LRLSLPDPPM FQHQQQEHDH 660 DRSHGHGGNG STQQALFPGA GSYSFGVWAE QAQSQRMLPW SVPDPGGGSG YLFNVSQQAA 720 ALGGQSQFLF QRGPLQSSTE PSDRGWPESV EADNPMSAIG FAPGIGFSGF RVPARIQGEE 780 EHNGSGNGDK PPPPPAVSSA SHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 460 | 513 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 460 | 513 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310872.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_021310873.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | A2WM14 | 1e-165 | PCF5_ORYSI; Transcription factor PCF5 | ||||
TrEMBL | A0A3L6R0N0 | 0.0 | A0A3L6R0N0_PANMI; Uncharacterized protein | ||||
STRING | AC205574.3_FGP006 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |