PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02769.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 400aa    MW: 46397.1 Da    PI: 7.9946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02769.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-53672011129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 
                                   +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++        ++e++e yfFs++dkky+tg+r+n
  Zmw_sc02769.1.g00080.1.am.mk  67 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcrlggPGEEEQNEFYFFSHKDKKYPTGTRTN 146
                                   69****************************.99**************95355544223366699***************** PP

                           NAM  76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   rat+ g+Wkatg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  Zmw_sc02769.1.g00080.1.am.mk 147 RATAVGFWKATGRDKPIYTNkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 201
                                   ******************9856777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5858228IPR003441NAC domain
PROSITE profilePS5100557.78467228IPR003441NAC domain
PfamPF023651.7E-2768200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSSDGKLLST RYHKRCRMEV ISACVTTAND HACFECYFSS VVHYRMRTCR CSCNRPGTQA  60
QAHQQLVPPG FRFHPTDEEL VDYYLRKKVA SRRIDLNVIK DVDLYKIEPW DLQEKCRLGG  120
PGEEEQNEFY FFSHKDKKYP TGTRTNRATA VGFWKATGRD KPIYTNKQRQ LVGMRKTLVY  180
YKGRAPNGHK SDWIMHEYRL ETNENGPPQA SHMLLHEEGW VVCRVFKKRL PTTQRESDHD  240
APCWYVDDDG PFMHDLNSPM SRMPPHHSMA LQEQHIQMLN NTYNYKRELK LQFQMPTHHA  300
FSTIPHDLES TSFHSLLISP DHQINVHHPN QHVQLTESAV DQVTDWRVLD KFVASQLSHD  360
ATKSAGYTDQ GGILQVNEKQ EVGRDYASTS ASSSQVDPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-496722915169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964278.10.0NAC domain-containing protein 105
SwissprotQ9FWX21e-104NAC7_ARATH; NAC domain-containing protein 7
TrEMBLK3XY210.0K3XY21_SETIT; Uncharacterized protein
STRINGSi006829m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]