PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02762.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 37149.5 Da PI: 6.1215 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.4 | 5.7e-53 | 5 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeelv +yL+kkv++++++l +vi++vd+y++ePw+L+ k+ e+++wyfF +d+ky+tg+r+nrat Zmw_sc02762.1.g00020.1.sm.mk 5 VPPGFRFHPTDEELVGYYLRKKVASQRIDL-DVIRDVDLYRIEPWHLQDhcKIGYeEQSDWYFFNYKDRKYPTGTRTNRAT 84 69****************************.9***************942443332556********************** PP NAM 79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g+Wkatg+dk+v +k ++ l+g++ktLvfy+grap+g+ktdW+mheyrle Zmw_sc02762.1.g00020.1.sm.mk 85 LTGFWKATGRDKAVRDKhGRGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 136 ****************966678****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-57 | 3 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.378 | 5 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-28 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MESCVPPGFR FHPTDEELVG YYLRKKVASQ RIDLDVIRDV DLYRIEPWHL QDHCKIGYEE 60 QSDWYFFNYK DRKYPTGTRT NRATLTGFWK ATGRDKAVRD KHGRGLIGMR KTLVFYTGRA 120 PNGRKTDWIM HEYRLETDEN AEEGWVVCRA FKKRAVHPQR GLGGDMGYSF HDPRTTGTAA 180 RFKQEPPQLD AGAAAALLQY STCLSELPQL ESPPPPNQDS HRGTADGERD YDLDPNKQDA 240 AVSTDWRALD RFVASQLSPD GERLSRGLPQ ELGKPVGELA GVDNGDESDI VALLLLDGVP 300 EEDAGLLDSV ASTSACLRKN EARCGTRYPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-46 | 2 | 154 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661306.1 | 1e-163 | NAC domain-containing protein 105 | ||||
Refseq | XP_022678690.1 | 1e-163 | NAC domain-containing protein 105 | ||||
Refseq | XP_022678691.1 | 1e-163 | NAC domain-containing protein 105 | ||||
Swissprot | Q9SL41 | 1e-97 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A2S3IP75 | 1e-151 | A0A2S3IP75_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02924.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3625 | 37 | 68 |
Publications ? help Back to Top | |||
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