PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02760.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CO-like | ||||||||
Protein Properties | Length: 361aa MW: 39620 Da PI: 4.7383 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 4e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ +C+++ lC +C + H+ Ht++ Zmw_sc02760.1.g00090.1.am.mkhc 4 LCDFCGKQRSMVYCRSDAASLCLSCDRNVHSAnalswrHTRT 45 7*****************************668888888876 PP | |||||||
2 | zf-B_box | 25.5 | 2.8e-08 | 47 | 88 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C++++++++ C +++ +C++C ++H H+++ Zmw_sc02760.1.g00090.1.am.mkhc 47 LCDRCGSQPAAVRCLEDNASFCQNCDWNGHDAesgaagHKRQ 88 7*****************************447778888876 PP | |||||||
3 | CCT | 62.4 | 1.4e-21 | 305 | 348 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ Zmw_sc02760.1.g00090.1.am.mkhc 305 RDSALSRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 348 899*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.16E-6 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.172 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-5 | 47 | 88 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.42E-6 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.045 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.428 | 305 | 347 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.5E-17 | 305 | 347 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MAALCDFCGK QRSMVYCRSD AASLCLSCDR NVHSANALSW RHTRTLLCDR CGSQPAAVRC 60 LEDNASFCQN CDWNGHDAES GAAGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN 120 CEDVISMMNI DDSGVSNHCG AMDDNQLLEI ASTTLMSDSP TGANLKSLIS SSSGDEANTL 180 PLATDQPDGP VPMMPKVSDA RVNDKFNDGT LYEDLCVDDA DLTFENYEDL FGNSHIQTEQ 240 LFDDAGIDSY FETKEMLPAD SNEVCLTGES SVGDHQDCRV SPTLNMGEPP WRPPGPDGSC 300 AGGSRDSALS RYKEKKKRRK FDKKIRYASR KARADTRRRV KGRFIKAGEA YDYDPLSPRS 360 Y |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 314 | 318 | KKKRR |
2 | 314 | 319 | KKKRRK |
3 | 315 | 319 | KKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827948.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-109 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A1E5WLW3 | 0.0 | A0A1E5WLW3_9POAL; Zinc finger protein CONSTANS-LIKE 10 | ||||
STRING | Si017374m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |