PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02759.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 295aa MW: 32358.9 Da PI: 7.8329

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02759.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2.1e-19	136	190	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k Zmw_sc02759.1.g00170.1.am.mkhc 136 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTK 190 788899***********************************************98 PP
2	HD-ZIP_I/II	128.6	2.5e-41	136	225	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+r Zmw_sc02759.1.g00170.1.am.mkhc 136 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRR 214 69*************************************************************************** PP HD-ZIP_I/II 80 LekeveeLreel 91 L+kev+eLr +l Zmw_sc02759.1.g00170.1.am.mkhc 215 LQKEVQELR-AL 225 ******9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.0E-18	128	193	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	132	192	IPR001356	Homeobox domain
SMART	SM00389	7.4E-18	134	196	IPR001356	Homeobox domain
Pfam	PF00046	9.7E-17	136	190	IPR001356	Homeobox domain
CDD	cd00086	1.83E-16	136	193	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-18	141	190	IPR009057	Homeodomain-like
PRINTS	PR00031	5.9E-6	163	172	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	167	190	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.9E-6	172	188	IPR000047	Helix-turn-helix motif
SMART	SM00340	4.4E-25	192	235	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.0E-11	192	226	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
SLLSQKPSEI QHSSALLALT LLSLKPSLSP PLLLSLPTPS SSSLSISLSL HPDSPRETEI 60 EEEMMERADD LGLSLSLSSS LAPRTHHHVA MLLRSPEKRF LEMPLLPAKR SEVAAEEGLR 120 GGSDEEDGGC GIDGSRKKLR LSKDQSAVLE DSFREHPTLN PRQKAALAQQ LGLRPRQVEV 180 WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLQKEVQ ELRALKLVSP HLYMHMSPPT 240 TLTMCPSCER VSNANSADRR AGAGSVDASP AAAGVDGAIC HRPIAVRPQQ SLASS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	SRKKLRL
2	184	192	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976428.1	1e-131	homeobox-leucine zipper protein HOX17
Swissprot	Q0JB92	1e-111	HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBL	A0A0A9IUY9	1e-130	A0A0A9IUY9_ARUDO; Uncharacterized protein
STRING	Si010958m	1e-130	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2587	38	89

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]