PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02755.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 485aa    MW: 52873.7 Da    PI: 9.3504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02755.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd  l+ +++++G+g +W   ++++g++R++k+c++rw++yl
  Zmw_sc02755.1.g00060.1.am.mk 14 KGPWSAEEDAVLKAYIEEHGTGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62
                                  79*********************************************97 PP
2Myb_DNA-binding39.21.6e-1270111346
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    +++eEd  +  +    G++ W+tIa+ ++ gRt++++k++w++
  Zmw_sc02755.1.g00060.1.am.mk  70 GFSKEEDRVICSLYISIGSR-WSTIAAQLP-GRTDNDVKNHWNT 111
                                   69******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.57962IPR017930Myb domain
SuperFamilySSF466891.76E-2612109IPR009057Homeodomain-like
SMARTSM007171.6E-121364IPR001005SANT/Myb domain
PfamPF002498.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221569IPR009057Homeodomain-like
CDDcd001674.16E-91662No hitNo description
PROSITE profilePS5129421.15963117IPR017930Myb domain
SMARTSM007172.0E-1067115IPR001005SANT/Myb domain
PfamPF002493.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2170117IPR009057Homeodomain-like
CDDcd001671.05E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWSAE EDAVLKAYIE EHGTGGNWIQ LPHKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FSKEEDRVIC SLYISIGSRW STIAAQLPGR TDNDVKNHWN TKLKRRLLGG  120
SRRPRVGERF LLMDAMSSQP QNSFTTSALE RMQLGLGLQR RHERLDSSPA FTLYNYSGSL  180
GATPTWPSPS PSPAASDSSE MWRRQLPRAA STGHSAGFRS HMQSSFSYAC AAGILPESMD  240
GTCTPPMSTS TSEIAAVGME SSSSTPTASS GASATFGSME DEIDMLLRQF QSFEGDGHGD  300
DVANGLDYFF GELDHVALGG SNGTWSSCST PGVDSVFQDF VQGYDHRPFA DRRSTDLHWK  360
LPRHSLPSPA PVPPPQPSPV ATKRRPLTRH LRLCCIHPKE PRQPLPRPLP PPSPDPCPVA  420
AKRRPLPRIL RFYCPHTEEP RRPCPASHRQ APTPALSPSS AALCLAASAS AAPNPKRTSP  480
TAAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802913.11e-149transcription factor MYB36-like
TrEMBLA0A3L6T8501e-149A0A3L6T850_PANMI; Transcription factor MYB35-like
STRINGPavir.Aa03183.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632