PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02752.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 397aa MW: 42591.9 Da PI: 5.0248

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02752.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.5	3.9e-10	116	139	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWt eLH+rFv av++LGG++ Zmw_sc02752.1.g00110.1.sm.mk 116 PRLRWTRELHARFVLAVSELGGAD 139 8*********************97 PP
2	G2-like	47.8	3.2e-15	162	200	17	55
G2-like 17 aveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + LG + +AtPk++l++m v gLtl+hvkS LQkYR+ Zmw_sc02752.1.g00110.1.sm.mk 162 TIFFLGVTAEATPKSVLRVMAVRGLTLHHVKSYLQKYRT 200 566699999*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-26	114	140	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-10	114	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-11	162	200	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.3E-26	172	204	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-10	173	202	IPR009057	Homeodomain-like
Pfam	PF14379	1.0E-8	253	288	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MAYWRGRVGH GCLVTHIPFP PRLRAGASCI CATGITEEEY IRAVESKETN LLSAQPVSES 60 SGSAPPAAAA SHAGGHATDA ATPRDVDFDT LEMASSGGGG VYAGQSGGEA AAGRSPRLRW 120 TRELHARFVL AVSELGGADS ESSLIGARFP LRLSALVLMI KTIFFLGVTA EATPKSVLRV 180 MAVRGLTLHH VKSYLQKYRT AVSRGLGTVT ADNGEGQNDW SSSSENEYNE EDRAFAGDEG 240 EALCDSSRSV AWMQREVRRN LQDQIERRLQ LRIEAQGRYL ESLLRRAYDV PADHSLGSPA 300 EAAETEHSEI TSPAVSTSSS SLSSSPPRHV STDSCVTSSS SSEAESKTRR RCTCADAREC 360 TVDQPVQSKR DVLQGDAEEA EEDADTENGS SEIDLNR

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MAYWRGRVGH GCLVTHIPFP PRLRAGASCI CATGITEEEY IRAVESKETN LLSAQPVSES  60
SGSAPPAAAA SHAGGHATDA ATPRDVDFDT LEMASSGGGG VYAGQSGGEA AAGRSPRLRW  120
TRELHARFVL AVSELGGADS ESSLIGARFP LRLSALVLMI KTIFFLGVTA EATPKSVLRV  180
MAVRGLTLHH VKSYLQKYRT AVSRGLGTVT ADNGEGQNDW SSSSENEYNE EDRAFAGDEG  240
EALCDSSRSV AWMQREVRRN LQDQIERRLQ LRIEAQGRYL ESLLRRAYDV PADHSLGSPA  300
EAAETEHSEI TSPAVSTSSS SLSSSPPRHV STDSCVTSSS SSEAESKTRR RCTCADAREC  360
TVDQPVQSKR DVLQGDAEEA EEDADTENGS SEIDLNR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973515.1	2e-68	myb family transcription factor PHL8
TrEMBL	A0A0A9EY77	1e-74	A0A0A9EY77_ARUDO; Uncharacterized protein
STRING	Si014218m	8e-68	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38