PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc02742.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 258aa MW: 27621.7 Da PI: 10.2023 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.3 | 8.8e-18 | 99 | 132 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Zmw_sc02742.1.g00030.1.am.mk 99 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 132 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.18E-13 | 90 | 133 | No hit | No description |
SMART | SM00401 | 1.6E-18 | 93 | 145 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 97 | 132 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.268 | 97 | 129 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.45E-14 | 98 | 130 | No hit | No description |
Pfam | PF00320 | 1.7E-15 | 99 | 132 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 99 | 124 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MMGGSEVIFP RPSPFRPTIQ SIGSDMIQRS KYDPYDIENY RADGSTGRWA VAPPAKMKIM 60 RKATSEYPEG GAARKPRRKA QAHQDESQQQ QATGVVRVCS DCNTTKTPLW RSGPCGPKSL 120 CNACGIRQRK ARRAMAAAAA AAASNGGAAV TVMVPEQTKR AKKEKRAEVD RSLPFKKRCK 180 MAAVDQAATA AKAVPAVAVP IPKEEQDQVL PADSTETAPS LQSKGSTPPP ATFHAFPADE 240 ITDAAMLLMT LSCGLVHT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795730.1 | 1e-120 | putative GATA transcription factor 22 | ||||
Swissprot | Q6YW48 | 9e-87 | CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | A0A2S3GN70 | 1e-119 | A0A2S3GN70_9POAL; Uncharacterized protein | ||||
STRING | Si019058m | 1e-99 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Publications ? help Back to Top | |||
---|---|---|---|
|