PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02724.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 247aa    MW: 26659.7 Da    PI: 7.9447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02724.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT  Edell+ +vk +G g+W+ ++++  ++R++k+c++rw++yl
  Zmw_sc02724.1.g00030.1.sm.mk 14 RGAWTSKEDELLAAYVKAHGEGRWRDVPQRARLRRCGKSCRLRWLNYL 61
                                  89********************************************97 PP

2Myb_DNA-binding513.3e-1667110146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Zmw_sc02724.1.g00030.1.sm.mk  67 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNS 110
                                   78999*****************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-23664IPR009057Homeodomain-like
PROSITE profilePS5129417.845961IPR017930Myb domain
SuperFamilySSF466896.6E-2911108IPR009057Homeodomain-like
SMARTSM007177.3E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001672.18E-91661No hitNo description
PROSITE profilePS5129425.42262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2365115IPR009057Homeodomain-like
SMARTSM007173.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1467110IPR001005SANT/Myb domain
CDDcd001676.29E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRRACCAKE GVKRGAWTSK EDELLAAYVK AHGEGRWRDV PQRARLRRCG KSCRLRWLNY  60
LRPNIKRGNI SDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNHWNS KLSRRAGAGG  120
AAVSTPDAGY HSTPTASASC DTGQASAHSG DRDSGSATAA IWAPKAVRCT GGSLFFLRDV  180
PPEAETRTGG EGSDDCSSSA ASIFAGAEEP CSSGGGGGDW MDDVRALASF LESDDEWVRC  240
QMMTESL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812125.11e-109anthocyanin regulatory C1 protein-like
SwissprotP102904e-97MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A2S3HKW71e-107A0A2S3HKW7_9POAL; Uncharacterized protein
TrEMBLA0A3L6PH971e-107A0A3L6PH97_PANMI; C1-B73
STRINGSb10g006700.11e-102(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]