PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02724.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 26659.7 Da PI: 7.9447 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Edell+ +vk +G g+W+ ++++ ++R++k+c++rw++yl Zmw_sc02724.1.g00030.1.sm.mk 14 RGAWTSKEDELLAAYVKAHGEGRWRDVPQRARLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Zmw_sc02724.1.g00030.1.sm.mk 67 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNS 110 78999*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.845 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.6E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.422 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.29E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRRACCAKE GVKRGAWTSK EDELLAAYVK AHGEGRWRDV PQRARLRRCG KSCRLRWLNY 60 LRPNIKRGNI SDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNHWNS KLSRRAGAGG 120 AAVSTPDAGY HSTPTASASC DTGQASAHSG DRDSGSATAA IWAPKAVRCT GGSLFFLRDV 180 PPEAETRTGG EGSDDCSSSA ASIFAGAEEP CSSGGGGGDW MDDVRALASF LESDDEWVRC 240 QMMTESL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812125.1 | 1e-109 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 4e-97 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A2S3HKW7 | 1e-107 | A0A2S3HKW7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PH97 | 1e-107 | A0A3L6PH97_PANMI; C1-B73 | ||||
STRING | Sb10g006700.1 | 1e-102 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |