PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02717.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 323aa    MW: 34285.6 Da    PI: 5.9096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02717.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-17182230556
                           AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g+
  Zmw_sc02717.1.g00040.1.am.mk 182 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRGH 230
                                   9*****.**********44465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.89179237IPR001471AP2/ERF domain
PRINTSPR003673.3E-7180191IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21181239IPR016177DNA-binding domain
CDDcd000181.36E-13182238No hitNo description
PfamPF008471.4E-12182230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-27182238IPR001471AP2/ERF domain
SMARTSM003801.2E-29182243IPR001471AP2/ERF domain
PRINTSPR003673.3E-7203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEPHFGNGLY NGNASYAREG QPLEQGYSHY SFTSYDGTFY SDGVFQPSSV CASPPPYGGS  60
GYTAAWVSSS SSSSSTSRRH SYPQQLHFGG GIDEYYGCQV EKAMGAVDMD HVSALMGAAS  120
ISTATTSTSG SSATRTYAPA SCCTTEHHGE AFVASHSPSA AILHSNAIDG SSGGGDDAPL  180
IGVRKRPWGK YAAEIRDSTR NGERVWIGTF DTPEAAALAY DQAAYSMRGH GAVLNFPVEH  240
VQETLRDLGL SGGAAAEDSP VLALKRRHCI RKRLPKTKKA AGEQQTTVTS RGDGKEKQAA  300
SCVLELEDLG PEYLEELLAQ SFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-26170240575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264278KRRHCIRKRLPKTKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.12e-83ethylene-responsive transcription factor 1
TrEMBLC5XCK21e-85C5XCK2_SORBI; Uncharacterized protein
STRINGSb02g005810.12e-86(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249