PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02713.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 569aa    MW: 62793.5 Da    PI: 10.574
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02713.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.7e-111448136
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                  +g+WT+eEde+lv  v+++G g+W++ +++ g  Rt
  Zmw_sc02713.1.g00130.1.am.mk 14 KGPWTPEEDEILVAHVQRFGHGNWRALPKRAG-ERT 48
                                  79******************************.898 PP
2Myb_DNA-binding47.24.9e-1597142148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Zmw_sc02713.1.g00130.1.am.mk  97 RGNFTKAEEDTIIHLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 142
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-24594IPR009057Homeodomain-like
PROSITE profilePS5129412.116956IPR017930Myb domain
SuperFamilySSF466891.87E-91051IPR009057Homeodomain-like
SMARTSM007171.5E-101393IPR001005SANT/Myb domain
PfamPF002496.4E-91448IPR001005SANT/Myb domain
CDDcd001673.53E-81691No hitNo description
SuperFamilySSF466891.13E-1978147IPR009057Homeodomain-like
PROSITE profilePS5129424.21692146IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2595145IPR009057Homeodomain-like
SMARTSM007176.2E-1496144IPR001005SANT/Myb domain
PfamPF002494.0E-1497142IPR001005SANT/Myb domain
CDDcd001672.88E-1099142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDEILVAHVQ RFGHGNWRAL PKRAGERTQP RLHRLHFSRL  60
AGRRGVLNDE GCVAGLLRCG KSCRLRWINY LRPDIKRGNF TKAEEDTIIH LHELLGNRWS  120
AIAARLPGRT DNEIKNVWHT HLKKRRDPTK QDHHAAPAVG ACSKKKRKPT AAAPKRGGAR  180
KASEEVPGLP ATTAPVSPKR SAVSSSVTES TSMTEQGNTG SSGGFARDES FTSSPEEEFQ  240
IDESFWSETL SMPLESFDVP MDSFDVVPVA SSSSGGADDM DYWLGVFMET DDVQELPQAA  300
STRKKKWGEP SRLPLDDDDH DCHSKSAALG NPDRAATSSA TVYFPSPVLR TAAPRPMARY  360
EYGSGIHLSP WRLRWIGFSL KRRRRRILGG GARSRGRVNG PRATASFASD SSRPTSKLSH  420
GSVTPNALKD AQAVDPRCPP LNGLLATPAQ ARDHGAWLDA GTASHEQQHS TSAGVQRTTR  480
TRVTEQGARI HQFDGTLRKY PVASGDIRNG IKDRHGNTDA VLRTVQRTHV DMQQQHALQN  540
TYTPLLKPQK HRIQKHLGTH AHRTGHLTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-21121475109B-MYB
1h8a_C5e-211214525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168KKKRKP
2380385KRRRRR
3380386KRRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448188.11e-117transcription factor MYB4
SwissprotQ7XBH41e-99MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A1D8F0K41e-118A0A1D8F0K4_9POAL; MYB protein
STRINGSb06g022660.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]